Arabidopsis
Arabidopsis is a model plant for the study of seed biology and oilseed metabolism. To profile the developmental expression of proteins during seed filling, Arabidopsis seed was analyzed using two-dimensional Difference Gel Electrophoresis (DIGE) at 5, 7, 9, 11, and 13 days after flowering. Two-dimensional gel reference maps are now available for proteins with pI values from 4 to 7 (gel pI 4-7) and pI 3-10 (gel pI 3-10). An alternative viewing option is the functional classification table (Protein table) or nested table (below). Proteome reference maps contain clickable spots linked to expression profiles and protein identification data. Details on expression data are also available for all 5 stages.
- Metabolism
- Amino Acids
- cobalamin-independent methionine synthase
- cobalamin-independent methionine synthase
- cobalamin-independent methionine synthase
- cobalamin-independent methionine synthase
- cysteine synthase cpACS1
- cysteine synthase, mitochondrial, putative / O-acetylserine (thiol)-ly
- glutamate-1-semialdehyde aminotransferase
- glutamate-1-semialdehyde aminotransferase
- glutamate-1-semialdehyde aminotransferase
- alanine:glyoxylate aminotransferase 2 homolog
- alanine:glyoxylate aminotransferase 2 homolog
- aspartate aminotransferase, cytoplasmic isozyme 1 / transaminase A (AS
- putative aldehyde dehydrogenase (NAD+)
- aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative
- monodehydroascorbate reductase (NADH)-like protein
- monodehydroascorbate reductase (NADH)-like protein
- monodehydroascorbate reductase
- argininosuccinate synthase-like protein
- S62654 glutathione synthase (EC 6.3.2.3) 2, cytosolic
- glycine hydroxymethyltransferase, putative / serine hydroxymethyltrans
- glycine hydroxymethyltransferase-like protein
- glycine hydroxymethyltransferase
- glycine hydroxymethyltransferase
- S18603 glutamate-ammonia ligase (EC 6.3.1.2), cytosolic (clone lambdaAtgskb6)
- S18602 glutamate-ammonia ligase (EC 6.3.1.2), cytosolic (clone lambdaAtgsr2)
- putative N-terminal acetyltransferase; 84330-89402
- cytidine deaminase
- putative o-acetylserine thiol lyase psis halleri subsp. halleri
- putative S-adenosylmethionine synthetase
- S-adenosylmethionine synthase 2
- s-adenosylmethionine synthetase
- aminomethyltransferase-like precursor protein
- similar to Aminotransferases class-I pyridoxal-phosphate-binding site [Medicago truncatula]
- S-adenosylmethionine-dependent methyltransferase
- similar to adenine phosphoribosyltransferase 1
- hydroxymethylbilane synthase
- gamma-glutamylcysteine synthetase
- Phosphoglycerate dehydrogenase-like protein
- Phosphoglycerate dehydrogenase-like protein
- Nitrogen and sulphur
- Nucleotides
- adenylate kinase
- adenosine kinase 1 (ADK1) / adenosine 5'-phosphotransferase 1
- putative ATP citrate lyase
- putative ATP citrate lyase
- putative inorganic pyrophosphatase
- uridylate kinase / uridine monophosphate kinase / UMP kinase (PYR6)
- uridylate kinase / uridine monophosphate kinase / UMP kinase (PYR6)
- Phosphate
- Polysaccharide catabolism
- Sugars and polysaccharides
- dTDP-D-glucose 4,6-dehydratase, putative
- Similar to dTDP-D-glucose 4,6-dehydratase
- 1-deoxy-d-xylulose-5-phosphate reductoisomerase
- UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase
- putative UDP-glucose pyrophosphorylase
- ADP glucose pyrophosphorylase small subunit
- ADP glucose pyrophosphorylase small subunit
- pfkB-type carbohydrate kinase family protein
- xylose isomerase
- 6-phosphogluconolactonase-like protein
- putative uridine diphosphate glucose epimerase
- amylogenin
- dTDP-glucose 4-6-dehydratase-like protein
- Lipid
- putative plastid dihydrolipoamide dehydrogenase
- putative acetyl-CoA carboxylase
- putative acetyl-CoA carboxylase
- similar to biotin carboxyl carrier protein
- T00580 probable cyl-carrier-protein] S-malonyltransferase (EC 2.3.1.39)
- T00580 probable cyl-carrier-protein] S-malonyltransferase (EC 2.3.1.39)
- dihydrolipoamide S-acetyltransferase, plastid
- dihydrolipoamide S-acetyltransferase, plastid
- putative pyruvate dehydrogenase E1 beta subunit, plastid
- putative pyruvate dehydrogenase E1 beta subunit, plastid
- putative alpha-carboxyltransferase
- putative alpha-carboxyltransferase
- putative alpha-carboxyltransferase
- putative alpha-carboxyltransferase
- 3-keto-acyl-CoA thiolase 2
- putative epoxide hydrolase
- T00667 3-oxoacyl-cyl-carrier-protein] reductase (EC 1.1.1.100)
- enoyl-ACP reductase
- putative phospholipase D
- putative stearoyl-acyl carrier protein desaturase
- acyl-cyl-carrier-protein] desaturase / stearoyl-ACP desaturase (SSI2)
- lipase-like protein
- myo-inositol-1-phosphate synthase
- myo-inositol-1-phosphate synthase
- Sterols
- similar to putative 3-beta hydroxysteroid dehydrogenase/isomerase protein [Oryza sativa]
- Cofactors
- oxidoreductase, acting on NADH or NADPH
- NAD-dependent epimerase/dehydratase family protein
- epimerase/dehydratase-like protein
- Others
- Energy
- Glycolysis
- putative triose-phosphate isomerase
- T50646 triose-phosphate isomerase (EC 5.3.1.1), cytosolic [imported]
- T50646 triose-phosphate isomerase (EC 5.3.1.1), cytosolic [imported]
- putative glyceraldehyde-3-phosphate dehydrogenase
- putative NADP-dependent glyceraldehyde-3-phosphate dehydrogenase rabid
- glyceraldehyde 3-phosphate dehydrogenase A subunit
- similar to NAD binding / glyceraldehyde-3-phosphate dehydrogenase
- similar to NAD binding / glyceraldehyde-3-phosphate dehydrogenase
- similar to NAD binding / glyceraldehyde-3-phosphate dehydrogenase
- similar to NAD binding / glyceraldehyde-3-phosphate dehydrogenase
- similar to NAD binding / glyceraldehyde-3-phosphate dehydrogenase
- similar to NAD binding / glyceraldehyde-3-phosphate dehydrogenase
- similar to NAD binding / glyceraldehyde-3-phosphate dehydrogenase
- similar to NAD binding / glyceraldehyde-3-phosphate dehydrogenase
- similar to NAD binding / glyceraldehyde-3-phosphate dehydrogenase
- putative enolase
- enolase (2-phospho-D-glycerate hydroylase)
- enolase (2-phospho-D-glycerate hydroylase)
- putative fructokinase
- putative fructokinase
- Similar to pyrophosphate-dependent phosphofuctokinase
- pyruvate kinase
- pyruvate kinase
- 2-dehydro-3-deoxyphosphoheptonate aldolase
- 2-dehydro-3-deoxyphosphoheptonate aldolase
- putative fructose bisphosphate aldolase
- fructose bisphosphate aldolase-like protein
- fructose bisphosphate aldolase-like protein
- putative aldolase
- putative aldolase
- putative aldolase
- A84600 probable fructose bisphosphate aldolase [imported]
- phosphoglycerate kinase
- phosphoglycerate kinase
- phosphoglycerate kinase, putative
- phosphoglycerate kinase, putative
- phosphoglycerate kinase, putative
- phosphoglycerate kinase, putative
- phosphoglycerate kinase, putative
- PGMU1_ARATH Probable phosphoglucomutase, cytoplasmic 1 (Glucose phosphomutase
- pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit
- aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconi
- putative glucose-6-phosphate 1-dehydrogenase
- Strong similarity to R. communis phosphoglycerate mutase
- Strong similarity to R. communis phosphoglycerate mutase
- Strong similarity to R. communis phosphoglycerate mutase
- Strong similarity to R. communis phosphoglycerate mutase
- Gluconeogenesis
- putative malate dehydrogenase
- putative cytosolic malate dehydrogenase
- similar to mitochondrial NAD-dependent malate dehydrogenase
- similar to mitochondrial NAD-dependent malate dehydrogenase
- similar to mitochondrial NAD-dependent malate dehydrogenase
- similar to mitochondrial NAD-dependent malate dehydrogenase
- X59970 3-isopropylmalate dehydrogenase (IMDH) fro
- putative glyoxysomal malate dehydrogenase precursor
- Pentose phosphate
- TCA pathway
- pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor
- pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor
- 2-oxoglutarate dehydrogenase, E3 subunit
- 2-oxoglutarate dehydrogenase E2 subunit
- succinate dehydrogenase flavoprotein alpha subunit
- fumarase; fumarate hydratase
- citrate synthase-like protein
- putative citrate synthase
- succinyl-CoA synthetase, alpha subunit
- succinyl-CoA synthetase, alpha subunit
- succinyl-CoA ligase beta subunit
- succinyl-CoA-ligase alpha subunit
- similar to dihydrolipoamide succinyltransferase
- Respiration
- ATPase alpha subunit
- ATPase alpha subunit
- ATPase alpha subunit
- ATPase beta subunit
- delta subunit of mitochondrial F1-ATPase
- mitochondrial F0 ATP synthase D chain
- mitochondrial F1 ATP synthase beta subunit
- mitochondrial F1 ATP synthase beta subunit
- Fermentation
- Electron-transport
- NADH dehydrogenase
- NADH-ubiquinone reductase 75kd subnit
- C84588 probable NADH-ubiquinone oxireductase [imported]
- FAD binding / disulfide oxidoreductase/ oxidoreductase
- FAD binding / disulfide oxidoreductase/ oxidoreductase
- Photosynthesis
- phosphoribulokinase precursor
- 6-phosphogluconate dehydrogenase, putative
- 6-phosphogluconate dehydrogenase, putative
- transketolase, putative
- transketolase
- transketolase
- ribulosebisphosphate carboxylase
- ribulosebisphosphate carboxylase
- ribulosebisphosphate carboxylase
- ribulosebisphosphate carboxylase
- ribulosebisphosphate carboxylase
- ribulosebisphosphate carboxylase
- ribulosebisphosphate carboxylase
- ribulose bisphosphate carboxylase/oxygenase activase / RuBisCO activas
- ribulose bisphosphate carboxylase/oxygenase activase / RuBisCO activas
- ribulose bisphosphate carboxylase/oxygenase activase / RuBisCO activas
- chlorophyll A-B binding protein / LHCII type I (LHB1B2) psis t
- chlorophyll A-B binding protein / LHCII type I (LHB1B2) psis t
- 23 kDa polypeptide of oxygen-evolving comlex (OEC)
- photosystem II oxygen-evolving complex 23, putative psis thali
- 33 kDa polypeptide of oxygen-evolving complex (OEC) in photosystem II
- 33 kDa polypeptide of oxygen-evolving complex (OEC) in photosystem II
- 33 kDa polypeptide of oxygen-evolving complex (OEC) in photosystem II
- putative ribulose-5-phosphate-3-epimerase
- PSI type III chlorophyll a/b-binding protein
- ferredoxin-NADP+ reductase
- thioredoxin family protein
- thioredoxin reductase 2 / NADPH-dependent thioredoxin reductase 2 (NTR
- Others
- B Chain B, Crystal Structure Of Thi1 Protein
- P II nitrogen sensing protein GLB I
- similar to cytosolic NADP-specific isocitrate dehydrogenase
- similar to cytosolic NADP-specific isocitrate dehydrogenase
- similar to cytosolic NADP-specific isocitrate dehydrogenase
- formate dehydrogenase
- Cell growth/division
- Cell growth
- putative cell division protein gi
- Meiosis
- DNA synth/replication
- Recombination/repair
- Cell cycle
- Cytokinesis
- Growth regulators
- Seed maturation
- late embryogenesis abundant domain-containing protein / LEA domain-con
- late embryogenesis abundant domain-containing protein / LEA domain-con
- similar to late embryogenesis abundant proteins
- late embryogenesis abundant protein (AtECP63)
- similar to embryo-specific protein [Oryza sativa]
- late embryogenesis abundant - was unknown
- Other
- Transcription
- rRNA synthesis
- tRNA synthesis
- mRNA synthesis
- putative poly(A)-binding protein
- putative Poly-A Binding Protein
- glycine-rich RNA-binding protein 8 (GRP8) (CCR1)
- glycine-rich RNA-binding protein (GRP7)
- putative RNA-binding protein
- putative RNA-binding protein
- RNA-binding protein 45 (RBP45), putative
- nuclear RNA binding protein A-like protein
- nuclear RNA binding protein A-like protein
- similar to CP29; RNA binding
- similar to CP29; RNA binding
- RNA binding
- General TFs
- putative transcription factor BTF3 (RNA polymerase B transcription facto
- transcription factor-like protein
- transcription factor APFI
- Specific TFs
- Chromatin modification
- mRNA processing
- RNA transport
- Others
- Protein synthesis
- Ribosomal proteins
- acidic ribosomal protein P2b (rpp2b), putative
- 40S ribosomal protein S15
- 40S ribosomal protein S7-like
- 40S ribosomal protein SA (RPSaB)
- 60S acidic ribosomal protein P0
- putative 60S ribosomal protein
- putative 60S ribosomal protein
- putative 60S ribosomal protein
- putative 60S ribosomal protein
- 60S ribosomal protein L22-like
- Translation factors
- eukaryotic translation initiation factor 4A, putative / eIF-4A, putati
- putative translation elongation factor EF-Tu precursor, chloroplast ra
- similar to elongation factor EF-2
- similar to elongation factor EF-2
- elongation factor 1-alpha
- elongation factor 1-alpha
- elongation factor EF-2
- eukaryotic translation initiation factor
- eukaryotic translation initiation factor
- putative elongation factor 1B gamma
- elongation factor 1B-gamma, putative / eEF-1B gamma, putative
- elongation factor 1-beta, putative
- eukaryotic translation initiation factor
- Translation control
- tRNA synthases
- tRNA synthetase class I (W and Y) family protein
- putative methionyl-tRNA synthetase
- lysyl-tRNA synthetase
- phenylalanyl-trna synthetase -like protein
- Others
- Protein destination and storage
- Folding and stability
- chaperonin 10
- mitochondrial chaperonin (HSP60)
- cytosolic chaperonin, delta-subunit
- cytosolic chaperonin, delta-subunit
- putative chaperonin
- JT0901 chaperonin 60 beta precursor
- JT0901 chaperonin 60 beta precursor
- JT0901 chaperonin 60 beta precursor
- dnaK-type molecular chaperone hsc70.1 - like
- dnaK-type molecular chaperone hsc70.1
- p23 co-chaperone
- S72485 peptidylprolyl isomerase (EC 5.2.1.8) ROF1
- S72485 peptidylprolyl isomerase (EC 5.2.1.8) ROF1
- peptidylprolyl isomerase ROC4
- mitochondrial chaperonin hsp60
- mitochondrial chaperonin hsp60
- mitochondrial chaperonin hsp60
- 70 kDa heat shock protein
- 70 kDa heat shock protein
- heat shock protein 70 like protein
- heat shock protein 70 like protein
- heat shock protein 70 (Hsc70-5)
- heat shock protein 70
- heat shock protein 70
- HSP90 isolog
- dnaJ-like protein
- heat shock protein 90
- heat shock protein 90
- Targeting
- Modification
- putative protein disulfide isomerase
- protein disulfide isomerase, putative
- protein disulfide isomerase, putative
- glutathione S-transferase
- glutathione S-transferase, putative
- similar to glutathione S-transferase
- 2,4-D-inducible glutathione S-transferase, putative psis thalian
- Complex assembly
- putative mitochondrial processing peptidase alpha subunit psis t
- putative mitochondrial processing peptidase alpha subunit psis t
- mitochondrial processing peptidase beta subunit, putative psis
- T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putativ
- T-complex protein 1, beta subunit
- putative chloroplast nucleoid DNA-binding protein
- putative chloroplast nucleoid DNA-binding protein
- putative rubisco subunit binding-protein alpha subunit psis thal
- Proteolysis
- 26S proteasome subunit RPN12
- 26S proteasome subunit 4
- 20S proteasome subunit (PAA2)
- putative 26S proteasome, non-ATPase regulatory subunit psis thal
- 26S proteasome AAA-ATPase subunit RPT4a-like protein psis thalia
- 26S proteasome AAA-ATPase subunit RPT4a-like protein psis thalia
- putative 20S proteasome beta subunit PBC2; 7006-8626 psis thalia
- putative 20S proteasome subunit PAE2
- 20S proteasome subunit PAA1 [M
- 20S proteasome beta subunit PBG1
- 20S proteasome beta subunit PBG1
- PRS6A_ARATH 26S protease regulatory subunit 6A homolog (TAT-binding protein ho
- PRS6A_ARATH 26S protease regulatory subunit 6A homolog (TAT-binding protein ho
- proteosome alpha subunit
- proteosome subunit
- putative proteasome epsilon chain precursor
- proteasome chain protein
- multicatalytic endopeptidase complex, proteasome component, alpha subuni
- multicatalytic endopeptidase complex, proteasome precursor, beta subunit
- multiubiquitin chain binding protein MBP1
- subtilisin-like protease
- subtilisin-like protease
- ATP-dependent Clp protease, ATP-binding subunit
- G96662 probable aminopeptidase F24D7.4 [imported]
- vacuolar processing enzyme/asparaginyl endopeptidase, putative p
- similar to AAA ATPase, central region; 26S proteasome subunit P45
- AtClpC endopeptidase Clp ATP-binding chain C
- Storage proteins
- putative cruciferin 12S seed storage protein
- putative cruciferin 12S seed storage protein
- putative cruciferin 12S seed storage protein
- 12S seed storage protein (CRA1)
- 12S seed storage protein (CRA1)
- 12S seed storage protein (CRA1)
- 12S seed storage protein (CRA1)
- 12S seed storage protein (CRA1)
- 12S seed storage protein (CRA1)
- 12S seed storage protein (CRA1)
- 12S seed storage protein (CRA1)
- 12S seed storage protein (CRA1)
- 12S seed storage protein (CRA1)
- 12S seed storage protein (CRA1)
- 12S seed storage protein (CRA1)
- 12S seed storage protein (CRA1)
- 12S seed storage protein (CRA1)
- 12S seed storage protein (CRA1)
- 12S seed storage protein (CRA1)
- 12S seed storage protein (CRA1)
- 12S seed storage protein, putative / cruciferin, putative psis
- 12S seed storage protein, putative / cruciferin, putative psis
- 12S seed storage protein, putative / cruciferin, putative psis
- 12S seed storage protein, putative / cruciferin, putative psis
- 12S seed storage protein, putative / cruciferin, putative psis
- 12S seed storage protein, putative / cruciferin, putative psis
- 12S seed storage protein, putative / cruciferin, putative psis
- 12S seed storage protein, putative / cruciferin, putative psis
- 12S seed storage protein, putative / cruciferin, putative psis
- 12S seed storage protein, putative / cruciferin, putative psis
- 12S seed storage protein, putative / cruciferin, putative psis
- putative cruciferin 12S seed storage protein
- 12S seed storage protein, putative / cruciferin, putative psis
- 12S seed storage protein, putative / cruciferin, putative psis
- 12S seed storage protein, putative / cruciferin, putative psis
- 12S seed storage protein, putative / cruciferin, putative psis
- 12S seed storage protein, putative / cruciferin, putative psis
- 12S seed storage protein, putative / cruciferin, putative psis
- 12S seed storage protein, putative / cruciferin, putative psis
- 12S seed storage protein, putative / cruciferin, putative psis
- 12S seed storage protein
- 12S seed storage protein
- 12S seed storage protein
- 12S seed storage protein
- 12S seed storage protein
- similar to storage protein
- similar to storage protein
- similar to storage protein
- similar to storage protein
- globulin-like protein
- NWMU2 - 2S albumin 2 precursor
- Transporters
- Ions
- putative potassium channel beta subunit
- Sugars
- Amino Acids
- Lipids
- Purine/pyrimides
- Transport ATPases
- vacuolar ATP synthase subunit C
- vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putati
- vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putati
- H+-transporting ATPase chain E, vacuolar
- T01103 probable H+-transporting two-sector ATPase (EC 3.6.3.14) gamma chain, mitoch
- vacuolar-type H+-ATPase subunit A
- chloroplast import-associated channel protein homolog
- ATP binding / hydrogen-transporting ATP synthase
- ATP binding / hydrogen-transporting ATP synthase
- ATP binding / hydrogen-transporting ATP synthase
- ABC-type
- Others
- Intracellular traffic
- Nuclear
- plastid
- dynamin-like protein 5
- Mitochondrial
- Vesicular
- Perixosomal
- Vacuolar
- Extracellular
- Import
- mitochondrial import inner membrane translocase subunit Tim17/Tim22/Ti
- Others
- Cell structure
- Cell wall
- Cytoskeleton
- actin-depolymerizing factor 3 (ADF3)


