Table S5
 Total protein isolated from developing soybean seeds at 2 WAF (biological sample 1, 2, and 3) was in-gel digested with sequencing grade trypsin and subjected to Sec-MudPIT analysis on a ProteomeX LTQ workstation LC-MS/MS.  Acquired MS data were searched against plant NCBI NR protein database.  Details are mentioned in Materials and Methods.  The table includes identified unique peptides, their corresponding protein, and their associated properties such as mass (MH+), charge (Z), and probability (P).  Abbreviations P (pro), P (pep), XC, MM, and pI represent protein (probability), peptide (probability), cross-correlation coefficient, molecular mass, and isoelectric point, respectively.  
BIOLOGICAL REPLICATION 1
Serial Protein and Peptide Description P (pro) Score Coverage MM pI Accession Peptide (Hits)    
No. File, Scan(s) Peptide MH+ z P (pep) XC DeltaCn Sp DeltaCn RSp Ions Count  
1 G protein beta subunit-like [Medicago sativa subsp. x varia]       1.83E-13 30.36 22.50 35666.1 7.20 2385376 3 (3 0 0 0 0)    
  Soy2WAF_SC1_S001_07, 17238 R.LTGHSHFVQDVVLSSDGQFALSGSWDGELR.L 3246.49146 3 1.83E-13 7.12 0.12 2571.3 0.12 1 45/116 3  
  Soy2WAF_SC1_S001_04, 8564 R.LYSLDAGSIIHALCFSPNR.Y 2135.43164 2 1.76E-11 4.95 0.54 1337.2 0.54 1 21/36    
  Soy2WAF_SC1_S001_02, 7118 R.AHTDVVTAIATPIDNSDMIVTASR.D 2499.78320 2 1.80E-04 3.96 0.50 389.9 0.50 1 23/46 1  
2 eukaryotic initiation factor 4A [Oryza sativa]       2.28E-13 32.23 4.30 47064.6 5.40 12381898 4 (0 4 0 0 0)    
  Soy2WAF_SC1_S001_04, 4144 R.DHTVSATHGDMDQITR.D 1784.88940 2 2.28E-13 4.24 0.58 1879.4 0.58 1 24/30    
  Soy2WAF_SC1_S001_08, 3896 R.SRDHTVSATHGDMDQITR.D 2028.15344 3 4.84E-08 4.21 0.49 1091.4 0.49 2 33/68    
  Soy2WAF_SC1_S001_05, 1621 R.DHTVSATHGDM*DQITR.D 1800.88883 2 9.90E-04 3.36 0.49 335.3 0.49 2 16/30    
  Soy2WAF_SC1_S001_08, 3254 R.SRDHTVSATHGDM*DQITR.D 2044.15284 3 2.42E-02 2.74 0.31 482.9 0.31 1 28/68    
3 putative subtilisin precursor [Glycine max]       5.65E-11 20.31 7.10 82693.0 6.90 7543936 2 (2 0 0 0 0)    
  Soy2WAF_SC1_S001_05, 7061 R.DFNGHGTHVSSTAVGVPVSGASFYGLAAGTAR.G 3092.32739 3 5.65E-11 5.46 0.56 1785.0 0.56 1 44/124    
  Soy2WAF_SC1_S001_02, 8490 R.AINFSPLLNSPDYPMIYAESAAR.A 2541.86353 2 7.42E-05 4.32 0.50 775.6 0.50 1 20/44    
4 Helicase, C-terminal [Medicago truncatula]       1.64E-10 30.27 12.30 46718.4 5.50 92873011 3 (3 0 0 0 0)    
  Soy2WAF_SC1_S001_04, 8341 R.GIDVQQVSLVINYDLPTQPENYLHR.I 2913.23364 3 1.64E-10 5.50 0.50 1962.2 0.50 1 35/96 6  
  Soy2WAF_SC1_S001_03, 3681 R.DHTVSATHGDMDQNTR.D 1785.83435 2 1.17E-08 4.74 0.08 1517.6 0.08 1 23/30 15  
  Soy2WAF_SC1_S001_02, 6829 R.VLITTDLLAR.G 1115.34827 2 4.94E-03 3.03 0.34 825.6 0.34 1 14/18 15  
5 Translation factor; Elongation factor G, III and V [Medicago truncatula]       4.68E-10 18.31 5.90 94141.8 5.70 92887256 2 (1 1 0 0 0)    
  Soy2WAF_SC1_S001_02, 13010 R.NGNEYLINLIDSPGHVDFSSEVTAALR.I 2933.17871 3 4.68E-10 6.12 0.57 1592.7 0.57 2 36/104    
  Soy2WAF_SC1_S001_04, 10576 K.STLTDSLVAAAGIIAQEVAGDVR.M 2258.51489 3 3.49E-02 2.64 0.25 711.2 0.25 1 26/88 5  
6 SAHH_MEDSA Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHc       7.10E-09 28.34 10.70 53150.9 5.60 1710838 3 (2 1 0 0 0)    
  Soy2WAF_SC1_S001_05, 9762 R.ITGSLHMTIQTAVLIETLTALGAEVR.W 2740.21265 2 7.10E-09 6.79 0.10 2358.6 0.10 1 27/50 13  
  Soy2WAF_SC1_S001_02, 8346 R.WVFPETKSGIIVLAEGR.L 1903.21350 2 3.43E-07 4.22 0.48 863.7 0.48 2 21/32 1  
  Soy2WAF_SC1_S001_03, 5439 R.HSLPDGLMR.A 1026.19519 2 2.79E-05 2.24 0.15 340.6 0.15 1 12/16 16  
7 unnamed protein product [Zea mays]       7.55E-09 30.27 9.50 27815.5 5.00 22224 3 (3 0 0 0 0)    
  Soy2WAF_SC1_S001_02, 9783 R.WAMLGALGCVFPELLSR.N 1921.31860 2 7.55E-09 5.49 0.46 1922.1 0.46 1 25/32 2  
  Soy2WAF_SC1_S001_02, 9788 R.ELEVIHSRWAMLGALGCVFPELLSR.N 2885.39966 3 3.46E-04 2.61 0.09 231.9 0.09 10 17/96 2  
  Soy2WAF_SC1_S001_02, 9137 R.WAM*LGALGCVFPELLSR.N 1937.31805 2 2.22E-02 4.01 0.29 992.0 0.29 1 18/32 2  
8 OSJNBa0020P07.3 [Oryza sativa (japonica cultivar-group)]       1.08E-08 20.32 6.00 93973.0 5.80 50921395 2 (2 0 0 0 0)    
  Soy2WAF_SC1_S001_04, 9161 R.DGNEYLINLIDSPGHVDFSSEVTAALR.I 2934.16333 3 1.08E-08 6.32 0.55 1135.4 0.55 1 34/104 5  
  Soy2WAF_SC1_S001_02, 15839 R.ITDGALVVVDCIEGVCVQTETVLR.Q 2648.05029 3 1.05E-03 3.57 0.32 622.2 0.32 2 23/92 6  
9 tubulin A [Glycine max]        1.13E-08 66.25 22.40 49691.9 4.90 62546341 7 (6 0 1 0 0)    
  Soy2WAF_SC1_S001_05, 11862 R.AFVHWYVGEGMEEGEFSEAR.E 2331.50488 3 1.13E-08 5.03 0.49 1662.1 0.49 1 32/76 26  
  Soy2WAF_SC1_S001_02, 7781 R.AVFVDLEPTVIDEVR.C 1702.92944 2 1.79E-08 4.85 0.52 1408.4 0.52 1 24/28 15  
  Soy2WAF_SC1_S001_02, 9125 R.LISQIISSLTTSLR.F 1532.80750 2 6.59E-06 2.79 0.27 1795.4 0.27 1 21/26 5  
  Soy2WAF_SC1_S001_03, 6117 R.SLDIERPTYTNLNR.L 1692.85474 3 2.24E-05 2.92 0.42 343.8 0.42 1 23/52 13  
  Soy2WAF_SC1_S001_02, 7921 R.FDGAINVDITEFQTNLVPYPR.I 2410.66650 2 1.44E-03 2.88 0.53 518.9 0.53 2 16/40 2  
  Soy2WAF_SC1_S001_05, 7277 R.AFVHWYVGEGM*EEGEFSEAR.E 2347.50435 2 9.99E-03 3.89 0.47 384.0 0.47 1 17/38 26  
  Soy2WAF_SC1_S001_02, 7448 R.AVCM*ISNNTAVAEVFSR.I 1886.14317 2 3.60E-02 2.49 0.14 253.1 0.14 1 14/32 8  
10 adenosylhomocysteinase [Oryza sativa (japonica cultivar-group)]       1.79E-08 16.22 9.60 49298.5 5.80 77550704 2 (1 0 1 0 0)    
  Soy2WAF_SC1_S001_02, 8346 R.WVFPETNTGIIVLAEGR.L 1903.17029 2 1.79E-08 4.35 0.03 992.3 0.03 1 22/32 2  
  Soy2WAF_SC1_S001_05, 9762 R.ISGSLHM*TIQTAVLIETLTALGAEVR.W 2742.18546 2 7.67E-04 3.71 0.66 793.2 0.66 3 18/50 1  
11 tubulin B4 [Glycine max]        2.33E-08 56.22 13.10 50431.4 4.60 62546343 6 (5 0 1 0 0)    
  Soy2WAF_SC1_S001_06, 8969 R.LHFFMVGFAPLTSR.G 1623.94556 2 2.33E-08 4.31 0.62 2454.5 0.62 1 23/26 46  
  Soy2WAF_SC1_S001_02, 6716 R.VSEQFTAMFR.R 1216.39148 2 8.99E-07 2.95 0.32 1824.9 0.32 1 17/18 38  
  Soy2WAF_SC1_S001_02, 7601 K.LAVNLIPFPR.L 1140.40271 2 4.73E-06 3.59 0.44 1002.7 0.44 1 17/18 40  
  Soy2WAF_SC1_S001_06, 9026 R.LHFFM*VGFAPLTSR.G 1639.94491 2 3.16E-05 2.66 0.57 1107.1 0.57 2 18/26 46  
  Soy2WAF_SC1_S001_02, 7002 R.AVLMDLEPGTMDSVR.T 1634.90039 2 1.85E-03 2.07 0.15 399.8 0.15 1 15/28 18  
  Soy2WAF_SC1_S001_02, 5831 R.FPGQLNSDLR.K 1147.26575 2 6.12E-03 2.84 0.20 846.1 0.20 2 15/18 53  
12 lipxygenase L-4 [Glycine max]       9.90E-08 40.23 7.40 96534.2 5.60 2160320 4 (4 0 0 0 0)    
  Soy2WAF_SC1_S001_02, 6239 R.PVLGGSALPYPR.R 1227.43713 2 9.90E-08 3.85 0.54 1636.8 0.54 1 19/22 1  
  Soy2WAF_SC1_S001_02, 9041 R.LLIEDYPYASDGLEIWDAIK.S 2325.59814 2 1.90E-06 4.61 0.51 1110.1 0.51 1 24/38 1  
  Soy2WAF_SC1_S001_03, 5884 R.HASDEFYLGQR.D 1323.39551 2 5.98E-06 2.64 0.48 230.4 0.48 1 13/20 2  
  Soy2WAF_SC1_S001_06, 10175 K.TITGKKETLIDLTVIEILSR.H 2244.65747 2 2.48E-02 3.51 0.25 807.0 0.25 1 18/38    
13 VHA-A; ATP binding / hydrogen-transporting ATP synthase, rotational       1.11E-07 20.23 4.30 68812.1 5.00 79321468 2 (2 0 0 0 0)    
  Soy2WAF_SC1_S001_03, 7170 R.NIIHFYNLANQAVER.A 1803.01404 2 1.11E-07 4.60 0.14 1059.0 0.14 1 20/28 2  
  Soy2WAF_SC1_S001_03, 7106 R.VGHDNLIGEIIR.L 1336.52197 2 5.04E-06 2.15 0.35 650.6 0.35 1 15/22 1  
14 lipoxygenase [Glycine max]       1.56E-07 60.29 10.80 96816.4 5.70 18746 6 (6 0 0 0 0)    
  Soy2WAF_SC1_S001_02, 6390 R.PILGGSSIYPYPR.R 1420.63733 2 1.56E-07 3.43 0.42 1770.3 0.42 1 21/24    
  Soy2WAF_SC1_S001_02, 12503 K.GGVIDTATGILGQGVSLVGGVIDTATSFLGR.N 2933.30640 3 7.19E-07 5.82 0.49 1561.1 0.49 1 43/120    
  Soy2WAF_SC1_S001_02, 5951 R.EVIAGVNPNVIR.R 1281.48633 2 6.71E-05 3.66 0.47 1029.3 0.47 1 17/22 1  
  Soy2WAF_SC1_S001_03, 7245 R.TGPVQLPYTLLHR.S 1495.75061 3 1.73E-04 2.92 0.42 414.2 0.42 1 22/48 1  
  Soy2WAF_SC1_S001_03, 5362 R.HASDEIYLGER.E 1290.36389 2 6.71E-04 2.97 0.33 676.2 0.33 1 16/20 1  
  Soy2WAF_SC1_S001_02, 6401 R.VTSSEFESFEDVR.S 1532.59021 2 1.36E-02 2.68 0.18 789.9 0.18 1 17/24 1  
15 RS8_ORYSA 40S ribosomal protein S8       1.57E-07 20.19 13.60 24924.4 10.80 1351014 2 (2 0 0 0 0)    
  Soy2WAF_SC1_S001_02, 5907 R.LDTGNYSWGSEAVTR.K 1656.73462 2 1.57E-07 3.65 0.45 1376.4 0.45 1 22/28 2  
  Soy2WAF_SC1_S001_02, 6572 R.ILDVVYNASNNELVR.T 1719.92017 2 2.59E-03 2.52 0.21 416.6 0.21 1 16/28 2  
16 atpA [Glycine max]       2.57E-07 20.17 5.30 55330.3 6.20 22739 2 (2 0 0 0 0)    
  Soy2WAF_SC1_S001_02, 7211 R.ITNFYTNFQVDEIGR.V 1817.97913 2 2.57E-07 3.33 0.37 1183.9 0.37 1 20/28 1  
  Soy2WAF_SC1_S001_02, 6267 R.VVDALGVPIDGR.G 1211.39294 2 4.00E-02 2.59 0.30 722.3 0.30 1 14/22 1  
17 Protein kinase; GroEL-like chaperone, ATPase [Medicago truncatula]        4.68E-07 20.19 7.80 56898.4 5.30 92891163 2 (2 0 0 0 0)    
  Soy2WAF_SC1_S001_06, 4282 R.GASHHVLDEAER.S 1321.38123 3 4.68E-07 3.62 0.21 1488.1 0.21 1 25/44 1  
  Soy2WAF_SC1_S001_05, 10039 R.QLIYNFPEELFADAGILAIEHADFDGIER.L 3308.64111 3 1.29E-03 3.67 0.41 249.6 0.41 2 23/112    
18 putative ketol-acid reductoisomerase precursor [Oryza sativa (japonica       6.44E-07 20.27 7.80 59681.5 5.70 55297085 2 (2 0 0 0 0)    
  Soy2WAF_SC1_S001_03, 10560 R.ATDVALGWSVALGSPFTFATTLEQEYR.S 2932.23242 2 6.44E-07 5.42 0.51 1014.2 0.51 1 24/52 1  
  Soy2WAF_SC1_S001_05, 9330 R.GILLGAVHGIVEALFR.R 1666.00354 2 4.11E-02 2.22 0.21 680.4 0.21 1 16/30 2  
19 26S proteasome AAA-ATPase subunit RPT1a [Arabidopsis thaliana]        9.90E-07 30.20 10.30 47793.0 6.30 6652878 3 (3 0 0 0 0)    
  Soy2WAF_SC1_S001_02, 4604 R.FDDGVGGDNEVQR.T 1408.41248 2 9.90E-07 4.01 0.40 928.5 0.40 1 20/24 4  
  Soy2WAF_SC1_S001_02, 8292 R.TMLEIVNQLDGFDAR.G 1722.94434 2 2.90E-04 3.66 0.42 1876.5 0.42 1 22/28 4  
  Soy2WAF_SC1_S001_07, 13326 R.TDACFIRVIGSELVQK.Y 1837.13342 2 1.40E-02 2.31 0.16 268.1 0.16 31 10/30 3  
20 alpha-tubulin #5 [Zea mays]       1.05E-06 20.21 8.00 49624.7 4.80 22156 2 (2 0 0 0 0)    
  Soy2WAF_SC1_S001_02, 7836 R.AIFVDLEPTVIDEVR.T 1716.95618 2 1.05E-06 4.29 0.16 1206.7 0.16 1 21/28 4  
  Soy2WAF_SC1_S001_02, 11424 R.FDGAINVDVTEFQTNLVPYPR.I 2396.63965 2 2.48E-02 2.87 0.00 403.7 0.00 2 14/40 3  
21 histone 4 [Zea mays]       1.36E-06 28.14 29.10 11551.5 12.20 886740 3 (2 1 0 0 0)    
  Soy2WAF_SC1_S001_02, 5563 R.ISGLIYEETR.G 1181.32043 2 1.36E-06 2.77 0.22 1314.0 0.22 1 17/18 1  
  Soy2WAF_SC1_S001_02, 5013 R.DNIQGITKPAIR.R 1326.52710 2 1.86E-03 2.15 0.00 445.1 0.00 1 13/22 3  
  Soy2WAF_SC1_S001_02, 6791 K.IFLENVIR.D 1004.20758 2 1.58E-02 2.28 0.07 385.6 0.07 54 11/14 1  
22 Ribosomal protein S11 [Medicago truncatula]        1.49E-06 20.25 20.50 16317.7 11.10 92889969 2 (2 0 0 0 0)    
  Soy2WAF_SC1_S001_04, 8315 R.IFASFNDTFIHVTDLSGR.E 2041.25183 2 1.49E-06 5.02 0.59 1482.3 0.59 1 22/34    
  Soy2WAF_SC1_S001_02, 5303 R.IEDVTPIPSDSTR.R 1430.54260 2 6.28E-03 3.52 0.19 819.8 0.19 1 19/24    
23 26S proteasome non-ATPase regulatory subunit [Arabidopsis thaliana] [MAS       2.35E-06 38.24 10.40 34362.2 6.40 21592398 4 (3 1 0 0 0)    
  Soy2WAF_SC1_S001_03, 10644 R.AGVPMEVMGLMLGEFVDEYTVR.V 2444.87622 2 2.35E-06 4.77 0.56 2192.7 0.56 1 25/42 3  
  Soy2WAF_SC1_S001_05, 5846 R.HYYSIAINYR.K 1300.44666 2 3.25E-03 2.08 0.33 493.7 0.33 1 12/18 5  
  Soy2WAF_SC1_S001_03, 10696 R.AGVPMEVM*GLM*LGEFVDEYTVR.V 2476.87494 2 3.01E-02 3.23 0.18 419.3 0.18 1 15/42 3  
  Soy2WAF_SC1_S001_03, 10696 R.AGVPM*EVMGLM*LGEFVDEYTVR.V 2476.87494 2 3.01E-02 3.38 0.05 418.3 0.05 2 15/42 3  
24 lipoxygenase [Glycine max]       2.53E-06 20.20 2.70 94368.7 5.90 18675 2 (2 0 0 0 0)    
  Soy2WAF_SC1_S001_08, 6196 R.HLSVLHPIYK.L 1207.44910 3 2.53E-06 3.20 0.35 1068.0 0.35 1 20/36 2  
  Soy2WAF_SC1_S001_02, 5534 R.PVLGGSSTFPYPR.R 1378.55737 2 2.26E-02 2.69 0.38 1101.6 0.38 1 19/24    
25 ribosomal protein S3 [Medicago truncatula]        3.14E-06 20.16 12.60 26658.0 10.00 92885944 2 (2 0 0 0 0)    
  Soy2WAF_SC1_S001_02, 5462 R.ELAEDGYSGVEVR.V 1424.49487 2 3.14E-06 2.25 0.22 674.4 0.22 1 19/24 5  
  Soy2WAF_SC1_S001_04, 9850 K.FVADGVFFAELNEVLTR.E 1928.17664 2 1.23E-03 3.01 0.22 1035.6 0.22 1 21/32    
26 sucrose synthase [Glycine max]       4.20E-06 40.16 5.00 92242.9 6.00 2606081 4 (4 0 0 0 0)    
  Soy2WAF_SC1_S001_03, 6113 R.IQNPDALQHVLR.K 1404.59961 2 4.20E-06 2.77 0.34 447.4 0.34 1 16/22    
  Soy2WAF_SC1_S001_02, 6804 R.PGVWEYLR.V 1020.16559 2 3.49E-03 2.77 0.41 773.3 0.41 1 13/14 4  
  Soy2WAF_SC1_S001_07, 5276 K.VFGTEHSHILR.V 1296.45959 2 3.87E-03 2.72 0.29 486.8 0.29 1 16/20 1  
  Soy2WAF_SC1_S001_03, 5210 R.ALENEMLHR.I 1113.27283 2 4.09E-03 2.37 0.21 147.8 0.21 29 11/16 1  
27 G beta-like protein [Glycine max]       6.40E-06 20.19 8.60 35608.0 7.60 1256608 2 (2 0 0 0 0)    
  Soy2WAF_SC1_S001_02, 6295 R.LWDLAAGTSAR.R 1161.29248 2 6.40E-06 2.97 0.29 1612.3 0.29 1 18/20    
  Soy2WAF_SC1_S001_02, 7032 R.FSPSTLQPTIVSASWDR.T 1893.08911 2 3.41E-05 3.52 0.38 1054.2 0.38 1 21/32    
28 lipoxygenase [Glycine max]       1.11E-05 38.22 6.00 96757.5 6.30 18677 4 (3 1 0 0 0)    
  Soy2WAF_SC1_S001_02, 9227 R.LVIEDYPYAVDGLEIWDAIK.T 2323.62549 2 1.11E-05 4.42 0.55 755.5 0.55 1 20/38 5  
  Soy2WAF_SC1_S001_02, 5327 R.DTMNINGLAR.L 1105.25073 2 2.27E-05 2.55 0.19 767.2 0.19 1 15/18 1  
  Soy2WAF_SC1_S001_07, 5317 R.HLSVVHPIYK.L 1193.42236 2 1.16E-03 2.43 0.43 795.3 0.43 1 15/18 2  
  Soy2WAF_SC1_S001_04, 5173 R.HASDEVYLGER.D 1276.33716 2 1.12E-02 2.26 0.53 728.9 0.53 1 16/20 3  
29 SecY protein; ABC transporter related [Medicago truncatula]        1.39E-05 20.18 6.70 52195.9 9.20 92876744 2 (2 0 0 0 0)    
  Soy2WAF_SC1_S001_06, 11531 R.GAEFEGAVIALFHLLITR.T 1958.29224 3 1.39E-05 3.56 0.05 885.2 0.05 2 28/68 3  
  Soy2WAF_SC1_S001_02, 8118 R.PFLSFLPEVQTADR.K 1620.83020 2 1.20E-04 3.58 0.36 890.3 0.36 1 19/26 1  
30 9-lipoxigenase [Oryza sativa (japonica cultivar-group)]        2.70E-05 14.11 3.00 97411.4 6.70 38636549 2 (0 1 1 0 0)    
  Soy2WAF_SC1_S001_03, 5339 K.HSADEIYLGQR.D 1289.37903 2 2.70E-05 2.11 0.47 485.0 0.47 2 15/20 1  
  Soy2WAF_SC1_S001_02, 13736 K.FPKPDIIKENEVAWR.T 1843.11804 2 6.86E-03 2.02 0.23 256.5 0.23 4 11/28 1  
31 ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide       3.96E-05 26.18 4.30 89957.4 4.90 18414193 3 (2 0 1 0 0)    
  Soy2WAF_SC1_S001_02, 8679 R.IVSQLLTLMDGLK.S 1431.76660 2 3.96E-05 3.59 0.49 2083.2 0.49 1 20/24 5  
  Soy2WAF_SC1_S001_02, 5459 R.LDEVGYDDVGGVR.K 1394.46887 2 3.38E-04 3.59 0.43 1424.6 0.43 1 21/24 4  
  Soy2WAF_SC1_S001_02, 6465 K.DFSTAILER.K 1052.16272 2 3.10E-02 2.14 0.05 359.5 0.05 42 11/16 3  
32 glyceraldehyde-3-phosphate dehydrogenase [Glycine max]        5.28E-05 30.18 12.70 36763.8 6.80 85720768 3 (3 0 0 0 0)    
  Soy2WAF_SC1_S001_02, 16184 R.VPTVDVSVVDLTVR.L 1499.73438 2 5.28E-05 2.86 0.42 974.9 0.42 1 15/26 16  
  Soy2WAF_SC1_S001_02, 8510 R.VIDLLVFVAK.K 1117.40576 2 1.42E-04 3.36 0.29 872.4 0.29 1 14/18 1  
  Soy2WAF_SC1_S001_03, 9046 R.FGIVEGLMTTVHSITATQK.T 2034.36572 2 2.96E-02 2.83 0.30 409.8 0.30 1 15/36 5  
33 laminin receptor-like protein [Brassica napus]       6.43E-05 18.21 8.60 32030.1 5.00 3769681 2 (1 1 0 0 0)    
  Soy2WAF_SC1_S001_02, 7307 R.VIVAIENPQDIIVQSAR.P 1866.15149 2 6.43E-05 4.25 0.48 2447.4 0.48 1 24/32 8  
  Soy2WAF_SC1_S001_02, 6185 R.LLILTDPR.T 941.14984 2 4.06E-04 3.07 0.39 994.1 0.39 1 13/14 13  
34 clathrin heavy chain, putative [Oryza sativa (japonica cultivar-group)]       1.37E-04 48.17 3.50 193346.1 5.10 77552802 5 (4 1 0 0 0)    
  Soy2WAF_SC1_S001_05, 8039 R.AHMGIFTELGVLYAR.Y 1678.97949 2 1.37E-04 2.45 0.34 908.2 0.34 1 20/28 8  
  Soy2WAF_SC1_S001_02, 9926 R.GCFNELISLMESGLGLER.A 2026.32361 2 1.40E-04 3.43 0.33 948.1 0.33 1 20/34 7  
  Soy2WAF_SC1_S001_02, 5954 R.DPTLAVVAYR.R 1105.26880 2 1.87E-04 2.93 0.48 1209.4 0.48 1 16/18 8  
  Soy2WAF_SC1_S001_02, 9993 R.GCFNELISLM*ESGLGLER.A 2042.32306 2 1.33E-03 2.38 0.10 419.5 0.10 2 15/34 7  
  Soy2WAF_SC1_S001_03, 10140 K.QVGYTPDYLFLLQTILR.T 2041.37805 2 4.06E-03 3.24 0.38 444.0 0.38 1 15/32 5  
35 Ras GTPase; ARF/SAR superfamily [Medicago truncatula]        1.51E-04 16.23 12.20 18683.2 5.50 92885316 2 (0 2 0 0 0)    
  Soy2WAF_SC1_S001_07, 7192 - 7194 R.HYFQNTQGLIFVVDSNDRDR.V 2425.60132 3 1.51E-04 3.97 0.46 482.8 0.46 1 29/76 17  
  Soy2WAF_SC1_S001_05, 7195 R.HYFQNTQGLIFVVDSNDR.D 2154.32690 2 1.85E-04 4.61 0.52 492.2 0.52 1 21/34 20  
36 EIF4A1; ATP-dependent helicase [Arabidopsis thaliana]        1.53E-04 20.25 10.40 46949.6 5.90 79313227 2 (2 0 0 0 0)    
  Soy2WAF_SC1_S001_08, 3896 R.SRDHTVSATHGDMDQNTR.D 2029.09827 3 1.53E-04 4.22 0.00 1113.1 0.00 1 33/68 12  
  Soy2WAF_SC1_S001_04, 8908 R.GIDVQQVSLVINFDLPTQPENYLHR.I 2897.23438 3 3.32E-03 3.12 0.26 785.5 0.26 1 26/96 8  
37 Alpha-tubulin #3 [Zea mays]       1.80E-04 18.23 7.80 49560.6 5.00 22150 2 (1 1 0 0 0)    
  Soy2WAF_SC1_S001_02, 7921 R.FDGALNVDVNEFQTNLVPYPR.I 2409.63843 2 1.80E-04 4.58 0.37 974.3 0.37 1 21/40 9  
  Soy2WAF_SC1_S001_02, 5725 R.SLDIERPNYSNLNR.L 1691.82690 2 1.23E-02 2.90 0.10 260.8 0.10 14 14/26    
38 ribosomal protein S7 [Oryza sativa (japonica cultivar-group)]        2.28E-04 40.19 16.60 22206.5 10.10 77550926 4 (4 0 0 0 0)    
  Soy2WAF_SC1_S001_02, 5479 R.QAVDISPLR.R 999.14624 2 2.28E-04 2.50 0.12 312.7 0.12 18 11/16 4  
  Soy2WAF_SC1_S001_02, 6645 R.VNQAIYLLTTGAR.E 1420.63892 2 2.34E-04 2.61 0.37 1541.6 0.37 1 19/24 1  
  Soy2WAF_SC1_S001_03, 6930 R.RVNQAIYLLTTGAR.E 1576.82532 2 5.61E-03 3.79 0.33 312.1 0.33 7 15/26 1  
  Soy2WAF_SC1_S001_03, 5172 R.LTNSLMM*HGR.N 1176.39553 2 1.06E-02 2.31 0.11 98.3 0.11 168 11/18 4  
39 Pyruvate kinase, barrel domain [Oryza sativa (japonica cultivar-group)]       2.30E-04 18.30 7.00 57441.8 6.30 77553678 2 (1 1 0 0 0)    
  Soy2WAF_SC1_S001_02, 7637 R.PTMPVLSVVIPR.L 1309.64624 2 2.30E-04 2.94 0.43 719.0 0.43 1 16/22 5  
  Soy2WAF_SC1_S001_02, 9343 R.AEATDVANAVLDGSDAILLGAETLR.G 2486.71777 2 1.39E-03 6.05 0.52 2727.1 0.52 1 28/48 7  
40 hypothetical protein [Oryza sativa (japonica cultivar-group)]       4.22E-04 20.13 36.50 12431.1 12.60 50910639 2 (2 0 0 0 0)    
  Soy2WAF_SC1_S001_07, 7080 R.QPRADPAAAGGSNGGGSLLR.R 1852.98987 3 4.22E-04 2.52 0.12 549.0 0.12 5 24/76    
  Soy2WAF_SC1_S001_01, 8537 R.RLSSPSGGGGGGCDGRGLIAWR.R 2174.38940 2 4.10E-02 2.06 0.15 217.5 0.15 1 13/42    
41 dnaK-type molecular chaperone hsp70 [Oryza sativa (japonica cultivar-gro       5.30E-04 50.20 12.50 59881.5 4.90 77552704 5 (5 0 0 0 0)    
  Soy2WAF_SC1_S001_02, 7765 R.FEELNMDLFR.K 1314.49194 2 5.30E-04 2.46 0.35 1438.8 0.35 1 16/18 21  
  Soy2WAF_SC1_S001_04, 11624 K.VQDLLLLDVTPLSLGLETAGGVMTVLIPR.N 3035.63159 2 5.83E-04 3.90 0.60 624.7 0.60 1 23/56 13  
  Soy2WAF_SC1_S001_03, 7692 R.ARFEELNMDLFR.K 1541.75647 3 5.98E-04 3.25 0.13 1312.0 0.13 1 22/44 20  
  Soy2WAF_SC1_S001_02, 7658 R.FEELNM*DLFR.K 1330.49135 2 2.20E-03 2.97 0.33 685.7 0.33 1 14/18 21  
  Soy2WAF_SC1_S001_03, 10121 R.TLSSTAQTTIEIDSLYEGIDFYSTITR.A 3027.28223 2 1.80E-02 2.63 0.29 365.4 0.29 1 14/52 8  
42 unknown protein [Arabidopsis thaliana]       7.89E-04 12.14 1.80 230851.3 5.80 15219352 2 (1 0 0 0 1)    
  Soy2WAF_SC1_S001_02, 8815 R.TGKSTAIEAGMFALDRLLDIK.R 2251.63208 2 7.89E-04 2.28 0.07 320.4 0.07 2 15/40    
  Soy2WAF_SC1_S001_04, 9850 -.M*TSEM*DDPEKAAVTITR.L 1928.13221 2 2.80E-03 2.00 - 456.3 - 2 16/32    
43 40S ribosomal S4 protein [Medicago truncatula]        7.99E-04 20.12 7.20 30047.0 10.80 92892080 2 (2 0 0 0 0)    
  Soy2WAF_SC1_S001_02, 6769 R.EVIAILMQR.H 1073.33484 2 7.99E-04 2.25 0.18 962.4 0.18 1 13/16 1  
  Soy2WAF_SC1_S001_02, 8786 R.ECLPLILILR.N 1240.58374 2 3.98E-02 2.44 0.00 1105.3 0.00 1 15/18 2  
44 Core histone H2A/H2B/H3/H4, putative [Oryza sativa (japonica cultivar-gr       8.95E-04 20.15 11.90 14052.0 10.50 77555213 2 (2 0 0 0 0)    
  Soy2WAF_SC1_S001_02, 5894 K.AGLQFPVGR.I 945.10022 2 8.95E-04 2.53 0.00 906.8 0.00 1 14/16 27  
  Soy2WAF_SC1_S001_04, 5359 R.HIQLAVR.N 837.00494 2 3.16E-03 2.49 0.03 618.5 0.03 2 12/12 14  
45 Heat shock protein Hsp70 [Medicago truncatula]        2.88E-03 18.16 3.70 71090.2 5.00 87241037 2 (1 1 0 0 0)    
  Soy2WAF_SC1_S001_02, 5541 R.TTPSYVAFTDSER.L 1474.55396 2 2.88E-03 2.28 0.38 251.4 0.38 9 12/24 15  
  Soy2WAF_SC1_S001_02, 4700 R.VEIIANDQGNR.T 1229.32520 2 6.38E-03 3.21 0.27 1518.8 0.27 1 17/20 24  
46 RNA binding / aconitate hydratase/ hydro-lyase/ iron ion binding / lya       3.01E-03 20.14 3.60 108494.3 6.70 18416900 2 (2 0 0 0 0)    
  Soy2WAF_SC1_S001_02, 5883 R.ILLESAIR.N 915.11237 2 3.01E-03 2.28 0.16 663.4 0.16 1 13/14 7  
  Soy2WAF_SC1_S001_04, 11752 R.EVKDAYCLLNFGDSVTTDHISPAGNIQK.T 3094.40161 3 2.59E-02 2.84 0.15 297.4 0.15 33 22/108 2  
47 beta-galactosidase/ sugar binding [Arabidopsis thaliana]        4.22E-03 14.13 1.50 87424.1 5.20 22329897 2 (0 1 1 0 0)    
  Soy2WAF_SC1_S001_03, 6106 R.VLLSGSIHYPR.S 1242.45178 2 4.22E-03 2.64 0.00 502.8 0.00 1 15/20 1  
  Soy2WAF_SC1_S001_08, 6138 R.RVLLSGSIHYPR.S 1398.63818 3 4.85E-03 2.59 0.25 809.0 0.25 1 21/44 1  
48 Clathrin propeller, N-terminal; Protein prenyltransferase [Medicago trun       4.32E-03 30.14 3.10 193325.5 5.20 92892796 3 (3 0 0 0 0)    
  Soy2WAF_SC1_S001_02, 9889 R.GYFNELISLMESGLGLER.A 2029.30273 2 4.32E-03 2.87 0.32 408.6 0.32 1 13/34    
  Soy2WAF_SC1_S001_02, 8559 R.EGLVSDAIESFIR.A 1436.59204 2 9.23E-03 2.82 0.29 687.1 0.29 1 15/24 7  
  Soy2WAF_SC1_S001_03, 9152 R.VIVNTHAIEPQSLVEFFGTLSR.E 2458.79736 2 3.01E-02 2.88 0.32 149.2 0.32 1 13/42    
49 phosphoribosylglycinamide formyltransferase, phosphoribosylglycinam       4.77E-03 20.13 5.30 106543.4 7.30 47825387 2 (2 0 0 0 0)    
  Soy2WAF_SC1_S001_06, 8028 K.LDVEVAQGVIAGIAEACQK.A 1972.25244 3 4.77E-03 2.53 0.04 440.6 0.04 3 22/72    
  Soy2WAF_SC1_S001_05, 8820 K.AGCALLGGETAEM*PGM*YPPGEYDLAGFAVGAVER.G 3490.88535 3 4.51E-02 2.56 0.10 217.6 0.10 10 21/132    
50 D-galactoside/L-rhamnose binding SUEL lectin; Galactose-binding like [Me       4.85E-03 12.13 1.40 93311.2 5.50 92868127 2 (0 1 0 1 0)    
  Soy2WAF_SC1_S001_08, 6138 R.RVLISGSIHYPR.S 1398.63818 3 4.85E-03 2.59 0.02 809.0 0.02 1 21/44 1  
  Soy2WAF_SC1_S001_04, 6477 R.VLISGSIHYPR.S 1242.45178 1 2.97E-02 1.91 0.07 130.8 0.07 127 8/20 4  
51 P0001B06.26 [Oryza sativa (japonica cultivar-group)]        1.66E-02 16.13 12.10 34206.4 8.30 34903548 2 (1 0 1 0 0)    
  Soy2WAF_SC1_S001_02, 7527 R.LFVLSLTCYGCASSISVLLK.L 2232.69165 2 1.66E-02 2.63 0.00 366.6 0.00 3 14/38    
  Soy2WAF_SC1_S001_04, 11512 K.TVKQMLSGGEWEINLR.R 1862.14319 2 1.96E-02 2.19 0.12 391.1 0.12 26 12/30    
52 DNA binding [Arabidopsis thaliana]       1.78E-02 16.12 6.40 53951.4 9.50 18395321 2 (0 2 0 0 0)    
  Soy2WAF_SC1_S001_02, 7263 R.LM*KKLATIER.K 1219.52309 2 1.78E-02 2.43 0.37 741.6 0.37 2 14/18    
  Soy2WAF_SC1_S001_02, 15715 K.NEEEESTPTM*RSGSNQIDDPR.V 2409.44443 2 2.02E-02 2.08 0.10 197.5 0.10 4 11/40    
53 Cell division protein FtsZ [Medicago truncatula]        2.20E-02 16.16 10.90 49553.6 4.80 92896308 2 (0 2 0 0 0)    
  Soy2WAF_SC1_S001_04, 8564 K.AYHEQLSVAEITNSAFEPSSM*M*AKCDPR.H 3203.53019 3 2.20E-02 2.60 0.05 230.4 0.05 131 19/108 9  
  Soy2WAF_SC1_S001_02, 11424 R.FDGALNVDVTEFQTNLVPYPR.I 2396.63965 2 2.48E-02 2.87 0.02 403.7 0.02 2 14/40 5  
54 retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (ja       1.46E-02 18.13 4.54 126019.9 9.80 77552313 2 (1 1 0 0 0)    
  Soy2WAF_SC1_S001_07, 14216 K.HFAEYCEELGVRHELTAPYSPQQNGVVER.R 3417.71265 3 1.46E-02 2.54 0.03 138.5 0.03 24 19/112    
  Soy2WAF_SC1_S001_09, 10561 R.LNTIVTQLVTLGDPEPDDKVVKK.Y 2523.90747 3 2.14E-02 2.60 0.10 188.6 0.10 152 19/88    
BIOLOGICAL REPLICATION 2
1 OSJNBa0020P07.3 [Oryza sativa (japonica cultivar-group)]       1.44E-14 20.35 6.00 93973.0 5.79 50921395 2 (2 0 0 0 0)  
  Soy2WAF_SC2_S001_02, 8972 R.DGNEYLINLIDSPGHVDFSSEVTAALR.I 2934.16333 3 1.44E-14 6.91 0.51 1812.0 0.51 1 40/104 5
  Soy2WAF_SC2_S001_02, 16072 R.ITDGALVVVDCIEGVCVQTETVLR.Q 2648.05029 2 2.77E-04 5.11 0.58 934.7 0.58 1 20/46 6
2 enolase [Glycine max]        1.52E-11 20.25 7.90 47719.0 5.19 42521309 2 (2 0 0 0 0)  
  Soy2WAF_SC2_S001_02, 7381 R.AAVPSGASTGIYEALELR.D 1806.00977 2 1.52E-11 4.44 0.48 916.8 0.48 1 26/34  
  Soy2WAF_SC2_S001_02, 16930 R.IEEELGAEAVYAGANFR.T 1839.98315 2 2.80E-05 3.69 0.46 1561.1 0.46 1 21/32  
3 G protein beta subunit-like [Medicago sativa subsp. x varia]       2.80E-11 30.35 22.50 35666.1 7.18 2385376 3 (3 0 0 0 0)  
  Soy2WAF_SC2_S001_07, 14089 R.LTGHSHFVQDVVLSSDGQFALSGSWDGELR.L 3246.49146 3 2.80E-11 6.13 0.09 1837.8 0.09 1 41/116 3
  Soy2WAF_SC2_S001_03, 8887 R.LYSLDAGSIIHALCFSPNR.Y 2135.43164 3 1.31E-08 4.60 0.62 1152.5 0.62 1 36/72  
  Soy2WAF_SC2_S001_02, 7100 R.AHTDVVTAIATPIDNSDMIVTASR.D 2499.78320 2 2.80E-03 3.35 0.31 225.5 0.31 1 22/46 1
4 eukaryotic initiation factor 4A [Oryza sativa]       7.16E-11 24.22 4.30 47064.6 5.42 12381898 3 (0 3 0 0 0)  
  Soy2WAF_SC2_S001_05, 3848 R.DHTVSATHGDMDQITR.D 1784.88940 2 7.16E-11 4.35 0.63 2196.2 0.63 1 25/30  
  Soy2WAF_SC2_S001_04, 4037 R.DHTVSATHGDM*DQITR.D 1800.88883 2 2.96E-10 3.89 0.53 477.5 0.53 2 18/30  
  Soy2WAF_SC2_S001_08, 3990 R.SRDHTVSATHGDMDQITR.D 2028.15344 3 7.01E-06 4.18 0.53 1033.5 0.53 2 32/68  
5 putative subtilisin precursor [Glycine max]       5.38E-10 30.29 7.10 82693.0 6.93 7543936 3 (3 0 0 0 0)  
  Soy2WAF_SC2_S001_05, 7593 R.DFNGHGTHVSSTAVGVPVSGASFYGLAAGTAR.G 3092.32739 3 5.38E-10 5.77 0.52 1492.2 0.52 1 42/124  
  Soy2WAF_SC2_S001_02, 8419 R.AINFSPLLNSPDYPMIYAESAAR.A 2541.86353 2 5.31E-05 4.03 0.49 1214.1 0.49 1 24/44  
  Soy2WAF_SC2_S001_02, 8393 R.AINFSPLLNSPDYPM*IYAESAAR.A 2557.86286 2 2.91E-04 3.14 0.37 438.2 0.37 1 16/44  
6 glyceraldehyde-3-phosphate dehydrogenase [Glycine max]        7.74E-10 20.18 7.10 36763.8 6.84 85720768 2 (2 0 0 0 0)  
  Soy2WAF_SC2_S001_02, 7231 R.VPTVDVSVVDLTVR.L 1499.73438 2 7.74E-10 3.63 0.59 2176.6 0.59 1 22/26 16
  Soy2WAF_SC2_S001_02, 8480 R.VIDLLVFVAK.K 1117.40576 2 1.32E-04 2.97 0.32 869.4 0.32 1 14/18 1
7 Helicase, C-terminal [Medicago truncatula]       2.59E-09 30.29 6.30 46718.4 5.47 92873011 3 (3 0 0 0 0)  
  Soy2WAF_SC2_S001_05, 3848 R.DHTVSATHGDMDQNTR.D 1785.83435 2 2.59E-09 4.89 0.11 2192.0 0.11 2 25/30 15
  Soy2WAF_SC2_S001_05, 1949 R.DHTVSATHGDM*DQNTR.D 1801.83369 2 9.07E-04 3.89 0.17 318.4 0.17 1 18/30 15
  Soy2WAF_SC2_S001_02, 6835 R.VLITTDLLAR.G 1115.34827 2 6.54E-03 2.73 0.33 1139.1 0.33 1 17/18 15
8 adenosylhomocysteinase [Oryza sativa (japonica cultivar-group)]       2.93E-09 20.19 9.60 49298.5 5.84 77550704 2 (2 0 0 0 0)  
  Soy2WAF_SC2_S001_02, 8287 R.WVFPETNTGIIVLAEGR.L 1903.17029 2 2.93E-09 3.70 0.06 960.9 0.06 1 21/32 2
  Soy2WAF_SC2_S001_05, 11993 R.ISGSLHM*TIQTAVLIETLTALGAEVR.W 2742.18546 3 4.38E-03 2.59 0.01 575.3 0.01 1 24/100 1
9 tubulin B4 [Glycine max]        3.72E-09 70.20 15.10 50431.4 4.56 62546343 7 (7 0 0 0 0)  
  Soy2WAF_SC2_S001_06, 9169 R.LHFFMVGFAPLTSR.G 1623.94556 2 3.72E-09 3.77 0.50 2226.0 0.50 1 22/26 46
  Soy2WAF_SC2_S001_02, 6974 R.AVLMDLEPGTMDSVR.T 1634.90039 2 4.70E-07 3.48 0.26 955.0 0.26 1 23/28 18
  Soy2WAF_SC2_S001_02, 6554 R.VSEQFTAMFR.R 1216.39148 2 1.31E-06 3.54 0.35 1368.5 0.35 1 15/18 38
  Soy2WAF_SC2_S001_02, 7565 K.LAVNLIPFPR.L 1140.40271 2 1.04E-05 3.67 0.45 1010.3 0.45 1 17/18 40
  Soy2WAF_SC2_S001_06, 9038 R.LHFFM*VGFAPLTSR.G 1639.94491 2 2.30E-05 2.86 0.45 667.1 0.45 1 15/26 46
  Soy2WAF_SC2_S001_02, 5545 R.FPGQLNSDLR.K 1147.26575 2 1.65E-04 2.73 0.18 830.0 0.18 1 16/18 53
  Soy2WAF_SC2_S001_02, 6183 R.YLTASAMFR.G 1060.25146 2 3.19E-03 2.25 0.20 496.5 0.20 1 12/16 32
10 tubulin A [Glycine max]        6.86E-09 50.27 18.70 49691.9 4.86 62546341 5 (5 0 0 0 0)  
  Soy2WAF_SC2_S001_02, 7730 R.AVFVDLEPTVIDEVR.C 1702.92944 2 6.86E-09 4.28 0.50 1215.8 0.50 1 21/28 15
  Soy2WAF_SC2_S001_05, 11725 R.AFVHWYVGEGMEEGEFSEAR.E 2331.50488 3 2.73E-07 4.99 0.51 1902.5 0.51 1 33/76 26
  Soy2WAF_SC2_S001_02, 11417 R.FDGAINVDITEFQTNLVPYPR.I 2410.66650 2 1.41E-05 4.81 0.42 1205.7 0.42 1 22/40 2
  Soy2WAF_SC2_S001_02, 9043 R.LISQIISSLTTSLR.F 1532.80750 2 1.87E-05 3.84 0.54 2311.9 0.54 1 23/26 5
  Soy2WAF_SC2_S001_02, 5727 R.SLDIERPTYTNLNR.L 1692.85474 2 1.95E-04 3.18 0.09 418.0 0.09 1 17/26 13
11 lipxygenase L-4 [Glycine max]       7.20E-09 40.21 7.40 96534.2 5.65 2160320 4 (4 0 0 0 0)  
  Soy2WAF_SC2_S001_02, 6097 R.PVLGGSALPYPR.R 1227.43713 2 7.20E-09 4.22 0.55 1836.3 0.55 1 21/22 1
  Soy2WAF_SC2_S001_02, 8953 R.LLIEDYPYASDGLEIWDAIK.S 2325.59814 2 5.01E-05 3.92 0.44 1038.9 0.44 1 23/38 1
  Soy2WAF_SC2_S001_04, 5935 R.HASDEFYLGQR.D 1323.39551 2 1.80E-03 2.20 0.46 280.2 0.46 1 16/20 2
  Soy2WAF_SC2_S001_05, 9818 K.TITGKKETLIDLTVIEILSR.H 2244.65747 2 3.01E-02 3.45 0.23 496.7 0.23 6 15/38  
12 Ribosomal protein S11 [Medicago truncatula]        1.11E-08 20.17 20.50 16317.7 11.08 92889969 2 (2 0 0 0 0)  
  Soy2WAF_SC2_S001_03, 8599 R.IFASFNDTFIHVTDLSGR.E 2041.25183 3 1.11E-08 3.47 0.51 451.2 0.51 1 28/68  
  Soy2WAF_SC2_S001_02, 5301 R.IEDVTPIPSDSTR.R 1430.54260 2 3.05E-02 2.35 0.20 372.0 0.20 1 15/24  
13 sucrose synthase [Glycine max]       5.41E-08 50.24 6.60 92242.9 6.03 2606081 5 (5 0 0 0 0)  
  Soy2WAF_SC2_S001_06, 7540 K.GILQHHQVIAEFEEIPEENR.Q 2389.60889 3 5.41E-08 4.51 0.44 1387.1 0.44 1 37/76  
  Soy2WAF_SC2_S001_04, 6365 R.IQNPDALQHVLR.K 1404.59961 2 1.50E-04 2.37 0.21 167.6 0.21 2 15/22  
  Soy2WAF_SC2_S001_02, 6789 R.PGVWEYLR.V 1020.16559 2 3.03E-04 3.07 0.39 802.9 0.39 1 13/14 4
  Soy2WAF_SC2_S001_07, 5224 K.VFGTEHSHILR.V 1296.45959 2 4.54E-04 3.02 0.40 624.9 0.40 1 17/20 1
  Soy2WAF_SC2_S001_06, 7370 R.PRPGVWEYLR.V 1273.46765 3 1.21E-02 3.32 0.30 1354.6 0.30 1 21/36 4
14 ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide       5.82E-08 20.18 3.20 89957.4 4.94 18414193 2 (2 0 0 0 0)  
  Soy2WAF_SC2_S001_02, 8650 R.IVSQLLTLMDGLK.S 1431.76660 2 5.82E-08 3.65 0.48 2622.5 0.48 1 22/24 5
  Soy2WAF_SC2_S001_02, 5457 R.LDEVGYDDVGGVR.K 1394.46887 2 5.65E-06 3.70 0.40 1294.6 0.40 1 20/24 4
15 G beta-like protein [Glycine max]       6.38E-08 20.18 8.60 35608.0 7.59 1256608 2 (2 0 0 0 0)  
  Soy2WAF_SC2_S001_02, 6247 R.LWDLAAGTSAR.R 1161.29248 2 6.38E-08 3.54 0.44 1696.0 0.44 1 19/20  
  Soy2WAF_SC2_S001_02, 7029 R.FSPSTLQPTIVSASWDR.T 1893.08911 2 1.82E-04 3.45 0.32 1106.8 0.32 1 22/32  
16 SAHH_MEDSA Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHc       6.58E-08 28.21 10.70 53150.9 5.62 1710838 3 (2 1 0 0 0)  
  Soy2WAF_SC2_S001_02, 8287 R.WVFPETKSGIIVLAEGR.L 1903.21350 2 6.58E-08 3.50 0.45 826.4 0.45 2 20/32 1
  Soy2WAF_SC2_S001_07, 16526 R.ITGSLHMTIQTAVLIETLTALGAEVR.W 2740.21265 3 1.01E-05 3.89 0.26 883.8 0.26 1 28/100 13
  Soy2WAF_SC2_S001_04, 5845 R.HSLPDGLMR.A 1026.19519 2 5.66E-04 2.21 0.28 323.7 0.28 1 12/16 16
17 lipoxygenase [Glycine max]       7.10E-08 60.28 11.10 96816.4 5.73 18746 6 (6 0 0 0 0)  
  Soy2WAF_SC2_S001_02, 12325 K.GGVIDTATGILGQGVSLVGGVIDTATSFLGR.N 2933.30640 2 7.10E-08 5.67 0.61 1081.7 0.61 1 25/60  
  Soy2WAF_SC2_S001_02, 6421 R.PILGGSSIYPYPR.R 1420.63733 2 2.44E-06 3.44 0.46 1591.3 0.46 1 20/24  
  Soy2WAF_SC2_S001_02, 5980 R.EVIAGVNPNVIR.R 1281.48633 2 6.98E-05 2.56 0.36 1001.1 0.36 1 16/22 1
  Soy2WAF_SC2_S001_03, 9659 R.LFILDYQDAFIPYLTR.I 1989.30151 2 2.50E-04 3.18 0.32 625.9 0.32 2 17/30 1
  Soy2WAF_SC2_S001_02, 6230 R.VTSSEFESFEDVR.S 1532.59021 2 7.21E-04 3.05 0.40 1000.4 0.40 1 16/24 1
  Soy2WAF_SC2_S001_03, 5710 R.HASDEIYLGER.E 1290.36389 2 9.70E-04 2.55 0.12 571.8 0.12 1 15/20 1
18 sucrose synthase [Medicago sativa]       7.24E-08 50.19 8.10 92332.0 5.81 3169544 5 (5 0 0 0 0)  
  Soy2WAF_SC2_S001_04, 9605 R.FEVWPYLETYTEDVAHELAK.E 2441.67578 2 7.24E-08 3.85 0.56 831.4 0.56 1 21/38 4
  Soy2WAF_SC2_S001_02, 5203 R.LLPDAVGTTCGQR.L 1388.57532 2 1.45E-03 2.70 0.35 398.4 0.35 1 16/24 5
  Soy2WAF_SC2_S001_02, 7351 R.NEILALLSR.L 1029.21545 2 2.49E-03 3.32 0.16 1436.7 0.16 1 15/16 3
  Soy2WAF_SC2_S001_02, 4887 K.ERLDETLTANR.N 1318.41870 2 3.27E-03 2.59 0.17 661.0 0.17 1 16/20 3
  Soy2WAF_SC2_S001_02, 15986 R.ELVNLVVVAGDR.R 1284.48706 2 3.35E-02 2.42 0.23 1027.2 0.23 1 15/22 3
19 clathrin heavy chain, putative [Oryza sativa (japonica cultivar-group)]       2.60E-07 30.20 2.50 193346.1 5.12 77552802 3 (3 0 0 0 0)  
  Soy2WAF_SC2_S001_05, 8633 R.AHMGIFTELGVLYAR.Y 1678.97949 2 2.60E-07 3.72 0.51 1214.2 0.51 1 21/28 8
  Soy2WAF_SC2_S001_02, 9797 R.GCFNELISLMESGLGLER.A 2026.32361 2 1.58E-05 3.54 0.29 533.3 0.29 1 15/34 7
  Soy2WAF_SC2_S001_02, 6089 R.DPTLAVVAYR.R 1105.26880 2 1.34E-02 2.83 0.25 901.7 0.25 1 15/18 8
20 Protein kinase; GroEL-like chaperone, ATPase [Medicago truncatula]        5.73E-07 20.20 7.80 56898.4 5.29 92891163 2 (2 0 0 0 0)  
  Soy2WAF_SC2_S001_06, 4345 R.GASHHVLDEAER.S 1321.38123 3 5.73E-07 3.53 0.26 1215.5 0.26 1 24/44 1
  Soy2WAF_SC2_S001_05, 14828 R.QLIYNFPEELFADAGILAIEHADFDGIER.L 3308.64111 3 2.78E-04 3.08 0.31 402.1 0.31 1 25/112  
21 atpA [Glycine max]       6.45E-07 20.19 5.30 55330.3 6.22 22739 2 (2 0 0 0 0)  
  Soy2WAF_SC2_S001_02, 6110 R.VVDALGVPIDGR.G 1211.39294 2 6.45E-07 3.44 0.35 1000.7 0.35 1 17/22 1
  Soy2WAF_SC2_S001_02, 7196 R.ITNFYTNFQVDEIGR.V 1817.97913 2 1.85E-06 3.89 0.40 1665.6 0.40 1 21/28 1
22 ribosomal protein S3 [Medicago truncatula]        9.56E-07 20.22 12.60 26658.0 10.02 92885944 2 (2 0 0 0 0)  
  Soy2WAF_SC2_S001_02, 5405 R.ELAEDGYSGVEVR.V 1424.49487 2 9.56E-07 3.48 0.38 1193.2 0.38 1 20/24 5
  Soy2WAF_SC2_S001_02, 10365 K.FVADGVFFAELNEVLTR.E 1928.17664 2 6.98E-04 4.36 0.46 1164.2 0.46 1 20/32  
23 dnaK-type molecular chaperone hsp70 [Oryza sativa (japonica cultivar-gro       1.18E-06 30.18 4.00 59881.5 4.87 77552704 3 (3 0 0 0 0)  
  Soy2WAF_SC2_S001_03, 8038 R.ARFEELNMDLFR.K 1541.75647 2 1.18E-06 3.45 0.32 1004.6 0.32 1 18/22 20
  Soy2WAF_SC2_S001_02, 7693 R.FEELNMDLFR.K 1314.49194 2 1.33E-05 3.47 0.35 1364.7 0.35 1 16/18 21
  Soy2WAF_SC2_S001_03, 6467 R.MVNHFVQEFK.R 1279.49243 2 5.62E-03 2.32 0.00 741.7 0.00 1 13/18 18
24 phosphoenolpyruvate carboxylase [Arabidopsis thaliana]        1.29E-06 20.19 3.10 109779.8 5.47 37785629 2 (2 0 0 0 0)  
  Soy2WAF_SC2_S001_03, 9602 R.AIPWIFAWTQTR.F 1490.73254 2 1.29E-06 3.75 0.00 714.7 0.00 1 18/22 30
  Soy2WAF_SC2_S001_02, 8481 R.VPYNAPLIQFSSWMGGDR.D 2039.30261 2 1.78E-02 3.06 0.38 375.5 0.38 1 15/34 27
25 SecY protein; ABC transporter related [Medicago truncatula]        1.51E-06 18.21 12.28 52195.9 9.22 92876744 2 (1 1 0 0 0)  
  Soy2WAF_SC2_S001_06, 11458 R.GAEFEGAVIALFHLLITR.T 1958.29224 2 1.51E-06 3.58 0.48 572.8 0.48 2 15/34 3
  Soy2WAF_SC2_S001_02, 7910 R.PFLSFLPEVQTADR.K 1620.83020 2 1.56E-02 2.01 0.14 461.5 0.14 1 14/26 1
  Soy2WAF_SC2_S001_09, 11720 K.LFYTSNMPIILQSALVSNLYFISQLLHR.K 3283.87402 3 2.55E-03 3.24 0.38 169.2 0.38 11 19/108 1
26 histone 4 [Zea mays]       2.87E-06 20.17 19.40 11551.5 12.15 886740 2 (2 0 0 0 0)  
  Soy2WAF_SC2_S001_02, 5719 R.ISGLIYEETR.G 1181.32043 2 2.87E-06 3.05 0.50 1205.4 0.50 1 17/18 1
  Soy2WAF_SC2_S001_03, 4510 R.DAVTYTEHAR.R 1163.22205 2 2.28E-03 2.52 0.17 534.6 0.17 1 15/18 1
27 methionine synthase [Glycine max]        3.59E-06 30.20 6.00 84281.6 5.90 33325957 3 (3 0 0 0 0)  
  Soy2WAF_SC2_S001_07, 7575 K.SEQAHYLDWAVHAFR.I 1830.98279 3 3.59E-06 3.95 0.38 825.7 0.38 1 25/56 1
  Soy2WAF_SC2_S001_02, 4921 R.IPPTEEIADR.I 1141.25635 2 5.40E-05 2.67 0.29 502.1 0.29 1 16/18 1
  Soy2WAF_SC2_S001_02, 8053 K.LVVSTSSSLLHTAVDLVNETK.L 2214.50195 2 5.99E-03 2.50 0.28 247.2 0.28 1 13/40  
28 RS8_ORYSA 40S ribosomal protein S8       5.57E-06 20.15 13.60 24924.4 10.81 1351014 2 (2 0 0 0 0)  
  Soy2WAF_SC2_S001_02, 5894 R.LDTGNYSWGSEAVTR.K 1656.73462 2 5.57E-06 2.79 0.35 925.1 0.35 1 21/28 2
  Soy2WAF_SC2_S001_02, 6639 R.ILDVVYNASNNELVR.T 1719.92017 2 5.61E-03 3.10 0.27 862.1 0.27 1 20/28 2
29 lipoxygenase [Glycine max]       6.89E-06 30.24 4.70 96757.5 6.26 18677 3 (3 0 0 0 0)  
  Soy2WAF_SC2_S001_07, 5239 R.HLSVVHPIYK.L 1193.42236 2 6.89E-06 2.73 0.50 823.8 0.50 1 15/18 2
  Soy2WAF_SC2_S001_02, 9177 R.LVIEDYPYAVDGLEIWDAIK.T 2323.62549 2 8.90E-05 4.85 0.41 813.3 0.41 1 21/38 5
  Soy2WAF_SC2_S001_02, 5447 R.DTMNINGLAR.L 1105.25073 2 7.42E-04 2.99 0.25 877.6 0.25 1 15/18 1
30 U2 auxiliary factor small chain-like [Oryza sativa (japonica cultivar-g       1.97E-05 18.15 9.30 29523.5 10.01 56202175 2 (1 1 0 0 0)  
  Soy2WAF_SC2_S001_02, 7865 R.PIIVDFSPVTDFR.E 1506.72705 2 1.97E-05 2.94 0.31 865.6 0.31 1 16/24 1
  Soy2WAF_SC2_S001_05, 4321 R.SRSPSPSPRHR.R 1264.37927 2 2.07E-02 2.09 0.37 346.8 0.37 11 12/20  
31 VHA-A; ATP binding / hydrogen-transporting ATP synthase, rotational       2.03E-05 40.17 10.60 68812.1 4.97 79321468 4 (4 0 0 0 0)  
  Soy2WAF_SC2_S001_03, 7412 R.NIIHFYNLANQAVER.A 1803.01404 3 2.03E-05 3.50 0.06 883.1 0.06 1 24/56 2
  Soy2WAF_SC2_S001_03, 7491 R.VGHDNLIGEIIR.L 1336.52197 2 4.31E-05 2.61 0.31 921.0 0.31 1 16/22 1
  Soy2WAF_SC2_S001_02, 6422 R.LAEMPADSGYPAYLAAR.L 1797.02490 2 3.56E-04 2.94 0.32 1148.7 0.32 1 23/32 3
  Soy2WAF_SC2_S001_02, 9227 R.GNEMAEVLMDFPQLTMTLPDGR.E 2466.84033 2 1.67E-02 3.45 0.43 538.8 0.43 1 19/42 1
32 catalase [Glycine max]       3.14E-05 30.19 8.70 56910.7 6.81 2661019 3 (3 0 0 0 0)  
  Soy2WAF_SC2_S001_02, 8731 R.EGNFDLVGNNFPVFFVR.D 1972.19116 2 3.14E-05 3.82 0.45 735.7 0.45 1 18/32 5
  Soy2WAF_SC2_S001_02, 5702 R.APGVQTPLIVR.F 1151.38379 2 2.12E-02 2.07 0.12 336.6 0.12 84 11/20 1
  Soy2WAF_SC2_S001_04, 7047 R.WVDALSDPRVTHEIR.S 1794.99194 3 4.42E-02 2.81 0.08 817.1 0.08 9 21/56 3
33 Alpha-tubulin #3 [Zea mays]       3.54E-05 18.21 7.80 49560.6 4.96 22150 2 (1 1 0 0 0)  
  Soy2WAF_SC2_S001_02, 8327 R.FDGALNVDVNEFQTNLVPYPR.I 2409.63843 2 3.54E-05 4.28 0.11 861.1 0.11 1 21/40 9
  Soy2WAF_SC2_S001_02, 5727 R.SLDIERPNYSNLNR.L 1691.82690 2 1.37E-02 2.90 0.09 310.3 0.09 6 15/26  
34 putative t-complex protein 1 theta chain [Oryza sativa (japonica cultiv       4.73E-05 20.15 4.60 60264.5 6.14 52076692 2 (2 0 0 0 0)  
  Soy2WAF_SC2_S001_02, 7628 R.LAIGDLATQYFADR.D 1554.72852 2 4.73E-05 2.96 0.28 2013.2 0.28 1 20/26 1
  Soy2WAF_SC2_S001_02, 5965 R.GGADQFIEEAER.S 1322.36267 2 2.70E-03 2.22 0.20 408.3 0.20 1 13/22 1
35 Translation factor; Elongation factor G, III and V [Medicago truncatula]       1.12E-04 18.30 5.90 94141.8 5.73 92887256 2 (1 1 0 0 0)  
  Soy2WAF_SC2_S001_04, 14849 R.NGNEYLINLIDSPGHVDFSSEVTAALR.I 2933.17871 3 1.12E-04 2.73 0.22 522.3 0.22 1 22/104  
  Soy2WAF_SC2_S001_02, 10376 K.STLTDSLVAAAGIIAQEVAGDVR.M 2258.51489 2 2.21E-03 3.49 0.29 1210.5 0.29 1 24/44 5
36 hypothetical protein [Oryza sativa (japonica cultivar-group)]       1.16E-04 26.13 7.80 51705.6 9.24 50911707 3 (1 2 0 0 0)  
  Soy2WAF_SC2_S001_02, 11723 R.AAFAAAATAALSRPHHPLR.R 1930.20544 2 1.16E-04 2.59 0.17 365.3 0.17 6 13/36  
  Soy2WAF_SC2_S001_02, 9797 R.AVRMVYIDESKSGLDLVK.L 2024.37085 2 1.43E-03 2.50 0.43 474.0 0.43 2 14/34  
  Soy2WAF_SC2_S001_02, 9848 R.AVRM*VYIDESKSGLDLVK.L 2040.37019 2 3.07E-03 2.67 0.05 522.0 0.05 1 15/34  
37 lipoxygenase [Glycine max]       2.11E-04 20.21 2.70 94368.7 5.94 18675 2 (2 0 0 0 0)  
  Soy2WAF_SC2_S001_07, 5778 R.HLSVLHPIYK.L 1207.44910 3 2.11E-04 3.67 0.38 1481.4 0.38 1 24/36 2
  Soy2WAF_SC2_S001_02, 5511 R.PVLGGSSTFPYPR.R 1378.55737 2 1.09E-02 2.65 0.27 1365.9 0.27 1 19/24  
38 heat shock protein HSP82 [Zea mays]       2.40E-04 20.14 1.40 81890.1 4.84 7546186 2 (2 0 0 0 0)  
  Soy2WAF_SC2_S001_02, 7135 R.APFDLFDTR.K 1082.19055 2 2.40E-04 2.22 0.33 704.0 0.33 2 13/16 9
  Soy2WAF_SC2_S001_03, 7768 R.RAPFDLFDTR.K 1238.37695 2 6.79E-03 2.38 0.21 248.2 0.21 53 10/18 9
39 elongation factor 1-alpha [Brassica napus]        3.69E-04 20.16 24.70 8504.7 5.09 83699974 2 (2 0 0 0 0)  
  Soy2WAF_SC2_S001_02, 5695 R.LPLQDVYK.I 976.15100 2 3.69E-04 2.53 0.21 596.7 0.21 4 13/14 24
  Soy2WAF_SC2_S001_02, 5455 K.IGGIGTVPVGR.V 1026.21484 2 1.53E-03 2.92 0.29 986.1 0.29 1 17/20 25
40 ribosomal protein S7 [Oryza sativa (japonica cultivar-group)]        3.72E-04 20.18 11.60 22206.5 10.09 77550926 2 (2 0 0 0 0)  
  Soy2WAF_SC2_S001_02, 5444 R.QAVDISPLR.R 999.14624 2 3.72E-04 2.17 0.12 586.6 0.12 2 15/16 4
  Soy2WAF_SC2_S001_03, 7306 R.RVNQAIYLLTTGAR.E 1576.82532 2 1.57E-02 3.65 0.35 323.4 0.35 1 16/26 1
41 T4O12.24 [Arabidopsis thaliana]       4.07E-04 18.19 6.90 58166.0 4.90 6721109 2 (1 1 0 0 0)  
  Soy2WAF_SC2_S001_02, 8955 R.TYPEEMIQTGISTIDVMNSIAR.G 2470.80542 2 4.07E-04 3.73 0.50 388.4 0.50 1 16/42 9
  Soy2WAF_SC2_S001_03, 10676 R.NIFQSLDLAWTLLR.I 1690.96680 2 5.57E-04 2.82 0.11 1359.2 0.11 1 18/26 10
42 EIF4A1; ATP-dependent helicase [Arabidopsis thaliana]        5.63E-04 20.24 10.40 46949.6 5.94 79313227 2 (2 0 0 0 0)  
  Soy2WAF_SC2_S001_04, 8819 R.GIDVQQVSLVINFDLPTQPENYLHR.I 2897.23438 3 5.63E-04 4.12 0.15 892.3 0.15 1 29/96 8
  Soy2WAF_SC2_S001_08, 3990 R.SRDHTVSATHGDMDQNTR.D 2029.09827 3 5.82E-03 4.75 0.12 1054.0 0.12 1 32/68 12
43 Core histone H2A/H2B/H3/H4, putative [Oryza sativa (japonica cultivar-gr       5.83E-04 18.14 11.90 14052.0 10.48 77555213 2 (1 1 0 0 0)  
  Soy2WAF_SC2_S001_02, 5861 K.AGLQFPVGR.I 945.10022 2 5.83E-04 2.82 0.07 943.3 0.07 1 14/16 27
  Soy2WAF_SC2_S001_03, 5305 R.HIQLAVR.N 837.00494 2 3.32E-03 2.73 0.08 638.3 0.08 1 12/12 14
44 B1340F09.15 [Oryza sativa (japonica cultivar-group)]       6.22E-04 20.15 11.40 53346.5 11.08 50921551 2 (2 0 0 0 0)  
  Soy2WAF_SC2_S001_03, 7306 R.EVVGGAAPPVLDELAAMPMPGGGAR.V 2363.74292 3 6.22E-04 2.99 0.19 120.7 0.19 37 19/96  
  Soy2WAF_SC2_S001_02, 12521 R.M*M*PFGAGRRSCPGM*GVAMAHVGLFVAALVR.E 3196.85314 3 1.19E-02 2.55 0.15 243.5 0.15 2 23/116  
45 Pyruvate kinase, barrel domain [Oryza sativa (japonica cultivar-group)]       7.28E-04 20.19 7.00 57441.8 6.30 77553678 2 (2 0 0 0 0)  
  Soy2WAF_SC2_S001_02, 7642 R.PTMPV