Table S6
Total protein isolated from developing soybean seeds at 3 WAF (biological sample 1, 2, and 3) was in-gel digested with sequencing grade trypsin and subjected to Sec-MudPIT analysis on a ProteomeX LTQ workstation LC-MS/MS.  Acquired MS data were searched against plant NCBI NR protein database.  Details are mentioned in Materials and Methods.  The table includes identified unique peptides, their corresponding protein, and their associated properties such as mass (MH+), charge (Z), and probability (P).  Abbreviations P (pro), P (pep), XC, MM, and pI represent protein (probability), peptide (probability), cross-correlation coefficient, molecular mass, and isoelectric point, respectively. 
BIOLOGICAL REPLICATION 1
Serial Protein and Peptide Description P (pro) Score Coverage MW pI Accession Peptide (Hits)    
No. File, Scan(s) Peptide MH+ z P (pep) XC DeltaCn Sp DeltaCn RSp Ions Count  
1 beta-conglycinin alpha prime subunit [Glycine max]       1.11E-16 178.36 35.23 72227.5 5.40 74271741 18 (17 1 0 0 0)    
  Soy3WAF_SC1_S001_02, 4736 K.ESEEEEEDQDEDEEQDKESQESEGSESQR.E 3447.18115 3 1.11E-16 7.17 0.58 2707.4 0.58 1 43/112 4  
  Soy3WAF_SC1_S001_02, 6638 R.VPAGTTYYVVNPDNDENLR.M 2138.27954 2 1.09E-12 5.87 0.62 1962.6 0.62 1 26/36 4  
  Soy3WAF_SC1_S001_04, 15050 - 15052 R.DLDVFLSVVDMNEGALFLPHFNSK.A 2709.06934 3 4.36E-12 5.88 0.50 2262.4 0.50 1 44/92 5  
  Soy3WAF_SC1_S001_02, 5456 K.VEEEEECEEGQIPRPR.P 1987.09460 3 1.21E-08 3.31 0.11 401.3 0.11 2 21/60 4  
  Soy3WAF_SC1_S001_02, 5477 K.VEEEEECEEGQIPR.P 1733.79260 2 3.52E-08 4.35 0.09 1390.3 0.09 1 22/26 4  
  Soy3WAF_SC1_S001_02, 5920 R.DSYNLQSGDALR.V 1339.39331 2 2.99E-07 3.21 0.31 1233.2 0.31 1 17/22 5  
  Soy3WAF_SC1_S001_01, 7407 K.DNVISQIPSQVQELAFPGSAK.D 2229.47534 3 3.13E-07 3.48 0.41 654.8 0.41 1 29/80 3  
  Soy3WAF_SC1_S001_02, 2159 K.ESQESEGSESQR.E 1353.28882 2 1.13E-06 2.14 0.44 327.4 0.44 1 10/22 4  
  Soy3WAF_SC1_S001_08, 8093 R.QQHGEKEEDEGEQPRPFPFPR.P 2538.67310 3 1.51E-06 2.55 0.42 515.2 0.42 1 27/80 4  
  Soy3WAF_SC1_S001_03, 2386 R.QQHGEKEEDEGEQPR.P 1796.79041 3 1.87E-05 2.87 0.44 217.7 0.44 57 16/56 4  
  Soy3WAF_SC1_S001_03, 5636 K.RSQQLQNLR.D 1143.28186 2 4.69E-05 2.29 0.11 307.0 0.11 3 13/16 5  
  Soy3WAF_SC1_S001_03, 6456 R.QQQEEQPLEVR.K 1384.47717 2 7.74E-05 2.58 0.20 341.2 0.20 1 13/20 5  
  Soy3WAF_SC1_S001_01, 3150 K.ESEEEEEDQDEDEEQDK.E 2112.91504 2 2.82E-04 2.68 0.33 557.9 0.33 1 16/32 4  
  Soy3WAF_SC1_S001_02, 16481 R.FESFFLSSTQAQQSYLQGFSK.N 2431.64087 2 4.09E-04 3.05 0.40 437.9 0.40 1 14/40 5  
  Soy3WAF_SC1_S001_03, 8215 R.M*ITLAIPVNKPGR.F 1426.75322 2 5.75E-04 2.42 0.25 255.1 0.25 3 13/24 5  
  Soy3WAF_SC1_S001_03, 8340 R.MITLAIPVNKPGR.F 1410.75378 2 1.98E-03 3.20 0.21 640.2 0.21 1 18/24 5  
  Soy3WAF_SC1_S001_04, 6318 R.SQQLQNLR.D 987.09552 2 1.24E-02 2.06 0.13 594.4 0.13 6 11/14 5  
  Soy3WAF_SC1_S001_02, 2025 R.EEGQQQGEER.L 1190.15955 2 2.93E-02 2.38 0.10 706.0 0.10 1 13/18 5  
  Soy3WAF_SC1_S001_10, 5483 R.QPHQEEEHEQKEEHEWHR.K 2423.45923 3 2.34E-07 3.42 0.56 412.3 0.56 1 24/68 2  
2 tubulin B4 [Glycine max]        4.23E-13 30.26 9.35 50431.4 4.60 62546343 3 (3 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 8868 K.GHYTEGAELIDSVLDVVR.K 1974.16052 2 4.23E-13 5.27 0.49 3372.7 0.49 1 28/34 31  
  Soy3WAF_SC1_S001_05, 10052 R.LHFFMVGFAPLTSR.G 1623.94556 2 1.60E-09 4.15 0.62 2358.0 0.62 1 23/26 46  
  Soy3WAF_SC1_S001_02, 7079 R.VSEQFTAMFR.R 1216.39148 2 4.11E-07 3.38 0.33 1690.2 0.33 1 17/18 38  
3 enolase [Glycine max]        4.85E-13 40.22 18.02 47719.0 5.20 42521309 4 (4 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 7670 R.AAVPSGASTGIYEALELR.D 1806.00977 2 4.85E-13 4.42 0.47 723.6 0.47 1 24/34    
  Soy3WAF_SC1_S001_02, 15819 R.SGETEDTFIADLSVGLATGQIK.T 2253.44873 2 8.22E-06 3.52 0.21 405.8 0.21 3 15/42    
  Soy3WAF_SC1_S001_02, 17570 R.GNPTVEVDLTCSDGTFAR.A 1940.08105 2 8.06E-04 2.85 0.33 451.5 0.33 1 16/34    
  Soy3WAF_SC1_S001_02, 15812 K.LTAEVGANVQIVGDDLLVTNPK.R 2267.56494 2 1.20E-02 3.50 0.47 243.4 0.47 1 14/42    
4 glycinin G1 subunit [soybeans, Peptide, 495 aa]       4.92E-13 80.46 30.10 55706.0 5.80 255221 8 (8 0 0 0 0)    
  Soy3WAF_SC1_S001_06, 12094 K.HQQEEENEGGSILSGFTLEFLEHAFSVDK.Q 3279.47192 3 4.92E-13 9.12 0.60 4268.6 0.60 1 50/112 1  
  Soy3WAF_SC1_S001_02, 10472 K.TNDTPMIGTLAGANSLLNALPEEVIQHTFNLK.S 3424.86963 3 4.27E-11 6.50 0.52 1013.5 0.52 1 40/124 1  
  Soy3WAF_SC1_S001_02, 6296 R.ALIQVVNCNGER.V 1373.56396 2 1.85E-08 2.45 0.23 1487.1 0.23 1 18/22 1  
  Soy3WAF_SC1_S001_03, 7249 R.RPSYTNGPQEIYIQQGK.G 1980.17004 3 1.24E-06 2.72 0.22 493.9 0.22 3 23/64 1  
  Soy3WAF_SC1_S001_02, 5925 R.VFDGELQEGR.V 1150.22327 2 4.00E-05 3.19 0.27 1426.0 0.27 2 17/18 1  
  Soy3WAF_SC1_S001_03, 7645 R.LSAEFGSLR.K 980.09979 2 9.08E-05 2.67 0.25 1086.4 0.25 1 14/16    
  Soy3WAF_SC1_S001_02, 7647 R.IESEGGLIETWNPNNKPFQCAGVALSR.C 2989.31177 3 3.63E-04 3.68 0.40 579.0 0.40 1 27/104 1  
  Soy3WAF_SC1_S001_03, 9072 R.VLIVPQNFVVAAR.S 1426.73145 2 2.49E-03 2.15 0.23 327.5 0.23 1 14/24 1  
5 lipoxygenase-2 [Glycine max]        1.60E-11 110.28 22.17 97265.1 6.20 505138 11 (11 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 12164 K.GNVGGLIGTGLNVVGSTLDNLTAFLGR.S 2616.95483 3 1.60E-11 4.90 0.50 1046.6 0.50 1 36/104    
  Soy3WAF_SC1_S001_03, 9204 R.IFFANHTYVPSETPAALVGYR.E 2354.64771 3 3.11E-09 4.18 0.39 1602.4 0.39 1 36/80    
  Soy3WAF_SC1_S001_04, 10822 R.LFMLDYHDVFMPYIR.R 1961.33838 3 1.85E-08 3.47 0.22 1029.0 0.22 1 29/56    
  Soy3WAF_SC1_S001_03, 8360 R.IYDYDVYNDLGNPDHGENFAR.P 2488.56641 3 4.21E-06 4.33 0.09 663.2 0.09 1 30/80    
  Soy3WAF_SC1_S001_06, 7203 R.HLSALHPIYK.L 1179.39575 2 1.68E-05 3.35 0.50 1174.0 0.50 1 16/18    
  Soy3WAF_SC1_S001_03, 15326 K.FQTLVDLSVIEILSR.H 1734.02991 2 3.06E-05 3.69 0.34 763.6 0.34 1 16/28    
  Soy3WAF_SC1_S001_03, 9417 R.LGPVQLPYTLLHPNSEEGLTCR.G 2495.83911 3 1.49E-04 2.86 0.27 561.9 0.27 1 26/84    
  Soy3WAF_SC1_S001_02, 7952 K.ITADALDLDGYTVDEALASR.R 2110.26440 2 2.51E-04 3.49 0.46 563.8 0.46 1 17/38    
  Soy3WAF_SC1_S001_05, 6229 R.GVAIKDPSAPHGLR.L 1418.62622 3 6.24E-04 3.63 0.29 593.6 0.29 2 23/52    
  Soy3WAF_SC1_S001_02, 5225 K.HSVEMSSAVYK.N 1238.39551 2 2.67E-03 2.92 0.56 318.9 0.56 1 14/20    
  Soy3WAF_SC1_S001_02, 8586 K.LPTEVISTIMPLPVVK.E 1738.16821 2 2.79E-02 2.34 0.12 714.2 0.12 1 15/30    
6 G protein beta subunit-like [Medicago sativa subsp. x varia]       4.24E-11 40.39 25.23 35666.1 7.20 2385376 4 (4 0 0 0 0)    
  Soy3WAF_SC1_S001_06, 19077 R.LTGHSHFVQDVVLSSDGQFALSGSWDGELR.L 3246.49146 3 4.24E-11 7.16 0.12 2975.5 0.12 1 47/116 3  
  Soy3WAF_SC1_S001_02, 8469 R.LYSLDAGSIIHALCFSPNR.Y 2135.43164 2 1.46E-08 3.52 0.57 1043.8 0.57 1 18/36    
  Soy3WAF_SC1_S001_02, 7660 R.AHTDVVTAIATPIDNSDMIVTASR.D 2499.78320 2 3.32E-04 3.80 0.41 418.9 0.41 1 20/46 1  
  Soy3WAF_SC1_S001_04, 9070 K.SIILWHLTK.E 1111.36133 2 1.96E-03 2.24 0.31 971.5 0.31 1 13/16 1  
7 sucrose synthase [Glycine max]       8.49E-11 80.25 17.89 92242.9 6.00 2606081 8 (8 0 0 0 0)    
  Soy3WAF_SC1_S001_05, 8302 K.GILQHHQVIAEFEEIPEENR.Q 2389.60889 3 8.49E-11 4.47 0.51 1732.1 0.51 1 39/76    
  Soy3WAF_SC1_S001_05, 9598 R.VNVHALVVEELQPAEYLHFK.E 2336.67383 3 1.25E-08 4.32 0.47 1149.2 0.47 1 33/76    
  Soy3WAF_SC1_S001_06, 7156 K.VFGTEHSHILR.V 1296.45959 2 6.26E-08 3.09 0.49 1222.8 0.49 1 17/20 1  
  Soy3WAF_SC1_S001_05, 10367 R.LTSFHPEIEELLYSSVENEEHICVLK.D 3117.47510 3 1.77E-03 4.81 0.41 599.5 0.41 1 27/100    
  Soy3WAF_SC1_S001_03, 6729 R.ALENEMLHR.I 1113.27283 2 1.94E-03 2.04 0.03 372.6 0.03 29 10/16 1  
  Soy3WAF_SC1_S001_03, 12916 R.VLESIQLLLDLLEAPDPCTLETFLGR.I 2957.43115 3 2.38E-03 5.01 0.44 1538.7 0.44 1 35/100    
  Soy3WAF_SC1_S001_04, 8380 R.KAEEYLGTVPPETPYSEFEHK.F 2452.65698 3 2.16E-02 2.80 0.36 156.2 0.36 6 22/80    
  Soy3WAF_SC1_S001_02, 8708 R.AADLLVDFFEK.C 1268.43970 2 3.28E-02 2.20 0.28 324.3 0.28 1 11/20    
8 lipoxygenase [Glycine max]       1.14E-10 30.26 6.94 96816.4 5.70 18746 3 (3 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 13054 K.GGVIDTATGILGQGVSLVGGVIDTATSFLGR.N 2933.30640 2 1.14E-10 5.20 0.51 1987.2 0.51 1 29/60    
  Soy3WAF_SC1_S001_01, 5651 K.STLDPTLYGDQTSTITK.E 1841.99402 2 9.56E-04 2.70 0.33 290.3 0.33 1 16/32 1  
  Soy3WAF_SC1_S001_02, 6692 R.QSLINADGIIEK.S 1301.47119 2 2.84E-02 2.61 0.21 387.1 0.21 3 14/22 2  
9 Plant lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 [Medicago truncatula]       1.99E-10 20.17 3.36 97000.5 5.80 92871485 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_03, 6652 R.PILGGSSTHPYPR.R 1382.54919 2 1.99E-10 3.46 0.43 1577.7 0.43 1 20/24 1  
  Soy3WAF_SC1_S001_02, 8864 K.LPTDILSQISPLPALK.E 1707.04749 2 3.93E-02 2.25 0.00 624.4 0.00 1 14/30 3  
10 unnamed protein product [Glycine max]       2.84E-10 90.29 29.90 54332.4 5.50 18609 9 (9 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 6046 R.NLQGENEEEDSGAIVTVK.G 1933.02051 2 2.84E-10 5.28 0.50 3117.4 0.50 1 28/34 1  
  Soy3WAF_SC1_S001_02, 5961 R.ALVQVVNCNGER.V 1359.53723 2 3.57E-09 2.24 0.33 933.8 0.33 1 16/22 4  
  Soy3WAF_SC1_S001_05, 11044 K.TNDRPSIGNLAGANSLLNALPEEVIQHTFNLK.S 3448.83105 3 1.95E-06 4.81 0.37 868.4 0.37 1 36/124 1  
  Soy3WAF_SC1_S001_02, 16516 R.FYLAGNQEQEFLK.Y 1587.75708 2 2.47E-04 2.26 0.16 439.1 0.16 1 13/24 3  
  Soy3WAF_SC1_S001_02, 6849 K.SQSDNFEYVSFK.T 1451.51880 2 6.26E-04 2.83 0.37 975.9 0.37 1 17/22 6  
  Soy3WAF_SC1_S001_02, 6832 R.RFYLAGNQEQEFLK.Y 1743.94336 2 9.65E-04 2.80 0.29 732.0 0.29 1 15/26 3  
  Soy3WAF_SC1_S001_03, 6632 K.LSAQYGSLR.K 995.11444 2 2.08E-03 2.02 0.19 354.2 0.19 4 11/16 1  
  Soy3WAF_SC1_S001_02, 7630 R.IESEGGFIETWNPNNKPFQCAGVALSR.C 3023.32837 3 2.61E-03 3.93 0.31 794.9 0.31 1 27/104 4  
  Soy3WAF_SC1_S001_02, 8579 K.QQEEENEGSNILSGFAPEFLK.E 2367.51050 2 3.90E-02 3.59 0.44 328.6 0.44 1 14/40 1  
11 glyceraldehyde-3-phosphate dehydrogenase [Glycine max]        4.15E-10 60.21 25.74 36763.8 6.80 85720768 6 (6 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 13084 R.VPTVDVSVVDLTVR.L 1499.73438 2 4.15E-10 4.06 0.55 2079.2 0.55 1 21/26 16  
  Soy3WAF_SC1_S001_02, 9020 R.FGIVEGLMTTVHSITATQK.T 2034.36572 3 4.48E-09 3.16 0.35 1271.9 0.35 1 32/72 5  
  Soy3WAF_SC1_S001_06, 6024 K.YDSVHGHWK.H 1129.20898 2 9.41E-06 2.12 0.31 738.5 0.31 1 13/16    
  Soy3WAF_SC1_S001_03, 10312 - 10314 R.VIDLLVFVAK.K 1117.40576 2 2.50E-05 2.99 0.38 672.2 0.38 1 14/18 1  
  Soy3WAF_SC1_S001_05, 8788 K.TLLFGDKPVTIFGHR.N 1701.99280 3 5.62E-05 3.64 0.53 527.2 0.53 2 23/56    
  Soy3WAF_SC1_S001_02, 15768 K.GILGYTEDDVVSTDFIGDSR.S 2160.28027 2 4.80E-03 2.69 0.36 218.2 0.36 2 12/38    
12 putative subtilisin precursor [Glycine max]       6.98E-10 80.28 18.44 82693.0 6.90 7543936 8 (8 0 0 0 0)    
  Soy3WAF_SC1_S001_04, 9142 R.DFNGHGTHVSSTAVGVPVSGASFYGLAAGTAR.G 3092.32739 3 6.98E-10 5.68 0.47 1582.4 0.47 1 42/124    
  Soy3WAF_SC1_S001_01, 5661 R.DLQSDVVLGNNQVVK.G 1628.80896 2 1.26E-09 3.42 0.35 1456.1 0.35 1 21/28    
  Soy3WAF_SC1_S001_04, 17758 K.ALGGIGLVHITDQSGSVAFYYVDFPVTEVK.S 3184.58618 3 6.07E-08 4.18 0.53 1536.1 0.53 1 34/116    
  Soy3WAF_SC1_S001_02, 8684 R.AINFSPLLNSPDYPMIYAESAAR.A 2541.86353 2 7.57E-06 3.87 0.46 820.7 0.46 1 21/44    
  Soy3WAF_SC1_S001_02, 8698 R.AINFSPLLNSPDYPM*IYAESAAR.A 2557.86286 2 2.20E-05 3.05 0.34 244.4 0.34 2 13/44    
  Soy3WAF_SC1_S001_02, 7157 K.TDLTTDPIAIGAFHSVQR.G 1943.14966 2 2.41E-05 3.11 0.30 581.7 0.30 1 17/34    
  Soy3WAF_SC1_S001_01, 4194 K.NDIYYSTDEK.I 1248.27734 2 1.87E-04 2.34 0.40 894.9 0.40 1 15/18    
  Soy3WAF_SC1_S001_01, 5399 K.SAIMTSAIQNDNLK.G 1506.70728 2 3.02E-04 2.54 0.30 560.8 0.30 1 16/26    
13 sucrose binding protein homolog S-64 [Glycine max]        7.82E-10 40.28 14.31 55834.0 6.30 6179947 4 (4 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 16670 R.DPESVLSAFSWNVLQAALQTPK.G 2402.68750 2 7.82E-10 5.51 0.62 1785.6 0.62 1 25/42 1  
  Soy3WAF_SC1_S001_03, 9728 K.ITLEPGDMIHIPAGTPLYIVNR.D 2421.84375 3 4.86E-08 4.60 0.41 928.2 0.41 1 33/84 1  
  Soy3WAF_SC1_S001_05, 6227 R.GHLQISCPHMSSR.S 1510.72729 3 4.31E-06 3.39 0.31 878.1 0.31 1 23/48 1  
  Soy3WAF_SC1_S001_05, 5160 R.SMSTIHYNSHATK.I 1477.62769 2 2.42E-05 3.27 0.39 1026.4 0.39 1 18/24 1  
14 beta-amylase [Glycine max]        2.76E-09 60.24 17.14 56070.4 5.40 71673371 6 (6 0 0 0 0)    
  Soy3WAF_SC1_S001_04, 11590 K.IPIEVLLEATKPTLPFPWLPETDMK.V 2880.43335 3 2.76E-09 4.71 0.51 2307.3 0.51 1 39/96 5  
  Soy3WAF_SC1_S001_02, 8970 K.SGPQELVQQVLSGGWR.E 1741.92908 2 8.04E-09 3.96 0.51 1665.9 0.51 1 21/30 7  
  Soy3WAF_SC1_S001_07, 8485 R.HHAILNFTCLEMR.D 1642.93042 3 3.51E-07 3.82 0.38 1474.7 0.38 1 26/48 8  
  Soy3WAF_SC1_S001_05, 8179 K.VSGIHWWYK.V 1176.35034 2 6.04E-06 2.14 0.26 834.0 0.26 1 12/16 10  
  Soy3WAF_SC1_S001_02, 13562 R.YDATAYNQIILNAR.P 1626.79480 2 2.69E-05 3.01 0.25 295.6 0.25 7 11/26 7  
  Soy3WAF_SC1_S001_01, 5151 R.LSDDLLQK.S 932.05341 2 4.76E-03 2.33 0.03 643.8 0.03 3 12/14 7  
15 beta-conglycinin alpha subunit [Glycine max]        2.77E-09 164.29 42.32 70063.3 4.90 68264915 17 (15 1 1 0 0)    
  Soy3WAF_SC1_S001_02, 4432 K.GSEEEDEDEDEEQDER.Q 1940.73572 2 2.77E-09 4.83 0.47 2127.4 0.47 1 22/30 4  
  Soy3WAF_SC1_S001_02, 6524 R.VPSGTTYYVVNPDNNENLR.L 2153.29419 2 1.58E-08 5.16 0.52 1188.8 0.52 1 23/36 5  
  Soy3WAF_SC1_S001_04, 14599 R.DLDIFLSIVDMNEGALLLPHFNSK.A 2703.10620 3 1.88E-08 3.78 0.44 772.5 0.44 1 29/92 5  
  Soy3WAF_SC1_S001_02, 16337 R.FESFFLSSTEAQQSYLQGFSR.N 2460.63916 2 1.24E-07 3.41 0.42 585.0 0.42 1 17/40 5  
  Soy3WAF_SC1_S001_02, 6122 R.NILEASYDTK.F 1154.25183 2 8.30E-05 3.41 0.45 698.6 0.45 1 15/18 11  
  Soy3WAF_SC1_S001_06, 3012 R.PRPQHPER.E 1017.12659 2 2.03E-04 2.49 0.28 550.1 0.28 1 11/14 10  
  Soy3WAF_SC1_S001_05, 5761 K.VEKEECEEGEIPRPR.P 1858.02319 3 2.73E-04 2.90 0.32 376.2 0.32 5 20/56 4  
  Soy3WAF_SC1_S001_02, 4246 R.SRDPIYSNK.L 1080.17615 2 6.38E-04 2.64 0.12 778.3 0.12 3 11/16 10  
  Soy3WAF_SC1_S001_05, 7097 R.EPQQPGEKEEDEDEQPRPIPFPR.P 2748.89917 3 9.57E-04 3.54 0.51 403.8 0.51 1 27/88 4  
  Soy3WAF_SC1_S001_03, 8228 K.NPFLFGSNR.F 1052.16772 2 1.97E-03 2.12 0.23 453.5 0.23 2 11/16 4  
  Soy3WAF_SC1_S001_01, 1322 R.EEGQQQGEQR.L 1189.17480 2 2.85E-03 2.80 0.10 889.4 0.10 1 15/18 5  
  Soy3WAF_SC1_S001_01, 4565 K.EQQQEQQQEEQPLEVR.K 2027.09558 2 3.27E-03 3.08 0.22 1461.1 0.22 1 22/30 4  
  Soy3WAF_SC1_S001_02, 17564 R.LQESVIVEISK.E 1245.44751 2 4.44E-03 2.55 0.39 867.1 0.39 1 16/20 11  
  Soy3WAF_SC1_S001_01, 9172 R.DLDIFLSIVDM*NEGALLLPHFNSK.A 2719.10568 3 4.95E-03 3.25 0.38 645.8 0.38 1 25/92 5  
  Soy3WAF_SC1_S001_02, 8819 R.NFLAGSQDNVISQIPSQVQELAFPGSAQAVEK.L 3374.70264 2 1.11E-02 2.54 0.43 180.2 0.43 1 14/62 4  
  Soy3WAF_SC1_S001_01, 3225 R.DPIYSNK.L 836.91217 1 2.26E-02 2.20 0.34 279.8 0.34 4 9/12 11  
  Soy3WAF_SC1_S001_06, 18327 K.AIVILVINEGDANIELVGLK.E 2094.48071 2 2.80E-02 4.02 0.45 598.5 0.45 2 19/38 5  
  Soy3WAF_SC1_S001_09, 6919 R.RHNNKNPFLFGSNR.F 1701.87305 3 1.09E-03 2.94 0.21 534.8 0.21 1 23/52    
16 triosephosphate isomerase [Glycine max]        2.95E-09 30.21 23.32 27203.9 5.80 77540216 3 (3 0 0 0 0)    
  Soy3WAF_SC1_S001_04, 13956 K.GGAYTGEVSAEMLVNLGIPWVIIGHSER.R 2957.35327 3 2.95E-09 4.18 0.47 702.3 0.47 1 27/108 1  
  Soy3WAF_SC1_S001_07, 8493 K.SLLRPDFHVSAQNCWVR.K 2086.36548 3 1.35E-06 2.97 0.37 593.6 0.37 1 25/64 1  
  Soy3WAF_SC1_S001_02, 5256 R.EAGTTTAVVAEQTK.A 1406.52112 2 5.82E-03 3.27 0.38 779.1 0.38 1 17/26 1  
17 Acetohydroxy acid isomeroreductase [Medicago truncatula]        3.55E-09 20.22 3.97 62904.4 6.30 92874663 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_04, 12148 R.GILLGAVHGIVESLFR.R 1682.00305 3 3.55E-09 4.00 0.45 1322.7 0.45 1 29/60 3  
  Soy3WAF_SC1_S001_01, 2022 R.DSLAEAK.S 733.79028 1 4.05E-02 1.63 0.21 360.0 0.21 1 9/12 4  
18 photosystem II CP47 chlorophyll apoprotein [Glycine max]       4.08E-09 20.22 5.91 56034.7 6.20 91214167 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 9948 R.MPTFFETFPVVLVDGDGIVR.A 2240.60620 2 4.08E-09 4.38 0.59 1421.1 0.59 1 23/38 2  
  Soy3WAF_SC1_S001_04, 6791 R.DKEGHELFVR.R 1230.35474 3 7.36E-03 2.70 0.30 1063.8 0.30 1 22/36    
19 beta-conglycinin alpha-subunit [Glycine max]        1.21E-08 16.20 2.57 72474.9 5.20 15425633 2 (0 2 0 0 0)    
  Soy3WAF_SC1_S001_02, 5456 K.VEKEEECEEGEIPRPR.P 1987.13770 3 1.21E-08 2.95 0.41 418.4 0.41 1 23/60    
  Soy3WAF_SC1_S001_02, 5477 K.VEKEEECEEGEIPR.P 1733.83569 2 1.55E-05 3.96 0.42 1109.8 0.42 2 20/26    
20 S18603 glutamate-ammonia ligase (EC 6.3.1.2), cytosolic (clone lambdaAtgskb6) - Arabi       3.25E-08 20.17 3.74 40729.6 5.30 99698 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 4649 K.EHIAAYGEGNER.R 1346.38745 2 3.25E-08 3.16 0.21 1018.4 0.21 1 18/22 27  
  Soy3WAF_SC1_S001_02, 4352 K.HKEHIAAYGEGNER.R 1611.70032 2 7.61E-05 3.31 0.44 474.2 0.44 1 18/26 25  
21 myo-inositol-1-phosphate synthase [Glycine max]        3.50E-08 20.23 7.25 56444.2 5.30 84311235 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 10734 - 10736 R.YSNLVVGLNDTMENLLAAVDR.N 2308.59741 2 3.50E-08 4.66 0.61 1961.6 0.61 1 26/40 2  
  Soy3WAF_SC1_S001_07, 10758 K.FHSFHPVATILSYLTK.A 1862.16296 3 1.40E-06 3.54 0.47 1240.7 0.47 1 28/60 11  
22 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase;       4.95E-08 30.21 5.24 84296.9 5.90 92876874 3 (3 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 14150 R.YGWTGGEIGFDTYFSMAR.G 2059.24585 2 4.95E-08 4.09 0.51 938.7 0.51 1 19/34 1  
  Soy3WAF_SC1_S001_02, 8775 K.LNLPILPTTTIGSFPQTVELR.R 2311.70557 2 1.40E-07 4.20 0.45 617.4 0.45 1 19/40 7  
  Soy3WAF_SC1_S001_04, 10213 K.KLNLPILPTTTIGSFPQTVELR.R 2439.87866 2 1.57E-04 4.04 0.43 612.0 0.43 1 20/42 7  
23 AT5g56010/MDA7_5 [Arabidopsis thaliana]        6.73E-08 30.20 7.78 60844.8 5.00 15215642 3 (3 0 0 0 0)    
  Soy3WAF_SC1_S001_04, 10166 K.HSEFISYPISLWIEK.T 1850.10583 2 6.73E-08 4.03 0.49 1928.9 0.49 1 22/28 8  
  Soy3WAF_SC1_S001_01, 4678 K.SGDELTSLK.D 950.02557 2 3.79E-04 2.86 0.19 1427.7 0.19 1 15/16 14  
  Soy3WAF_SC1_S001_03, 11158 K.CLELFFEIAENKEDYNK.F 2163.39209 2 4.06E-02 2.45 0.07 436.5 0.07 3 13/32 8  
24 p24 oleosin isoform B [Glycine max]       7.11E-08 20.13 8.97 23392.5 9.40 476216 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_03, 5350 K.APSSIYHSER.G 1147.22266 2 7.11E-08 2.70 0.32 701.4 0.32 1 15/18    
  Soy3WAF_SC1_S001_03, 6393 R.YEAGVVPPAR.F 1059.20007 2 4.68E-03 2.30 0.32 632.4 0.32 1 14/18    
25 Translation factor; Elongation factor G, III and V [Medicago truncatula]       8.92E-08 22.26 8.07 94141.8 5.70 92887256 3 (2 0 0 0 1)    
  Soy3WAF_SC1_S001_03, 12118 K.STLTDSLVAAAGIIAQEVAGDVR.M 2258.51489 2 8.92E-08 4.35 0.48 2389.1 0.48 1 28/44 5  
  Soy3WAF_SC1_S001_06, 8465 R.GHVFEEMQRPGTPLYNIK.A 2117.41650 3 1.89E-04 3.38 0.41 537.5 0.41 1 24/68 11  
  Soy3WAF_SC1_S001_03, 17652 R.NGNEYLINLIDSPGHVDFSSEVTAALR.I 2933.17871 3 8.81E-03 2.75 - 411.5 - 4 22/104    
26 cytochrome P450 monooxygenase CYP701A [Glycine max]        9.73E-08 20.17 4.21 56899.6 7.40 85001715 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_04, 9640 K.LPYLGAVFHETLR.K 1516.76831 3 9.73E-08 3.37 0.44 762.5 0.44 1 24/48    
  Soy3WAF_SC1_S001_03, 6522 K.HGPIYSIR.T 943.08435 2 3.03E-02 2.46 0.27 661.2 0.27 1 12/14    
27 adenosylhomocysteinase [Oryza sativa (japonica cultivar-group)]       1.53E-07 28.16 12.44 49298.5 5.80 77550704 3 (2 1 0 0 0)    
  Soy3WAF_SC1_S001_02, 5811 R.LVGVSEETTTGVK.R 1320.47131 2 1.53E-07 2.56 0.47 843.1 0.47 1 18/24 15  
  Soy3WAF_SC1_S001_04, 17222 R.ISGSLHM*TIQTAVLIETLTALGAEVR.W 2742.18546 3 1.65E-03 3.25 0.30 802.0 0.30 1 27/100 1  
  Soy3WAF_SC1_S001_02, 13536 R.WVFPETNTGIIVLAEGR.L 1903.17029 2 2.37E-02 2.54 0.06 614.2 0.06 1 16/32 2  
28 Annexin, putative [Medicago truncatula]        2.53E-07 30.19 6.57 38447.7 9.00 92891289 3 (3 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 6152 K.RLESELSGDFER.A 1438.52478 2 2.53E-07 3.65 0.33 961.4 0.33 1 18/22    
  Soy3WAF_SC1_S001_02, 6200 R.LESELSGDFER.A 1282.33850 2 3.72E-05 3.44 0.35 1191.1 0.35 1 18/20    
  Soy3WAF_SC1_S001_02, 6533 R.DAVLANVAIK.D 1014.20081 2 1.13E-02 2.25 0.12 743.5 0.12 1 14/18 2  
29 tubulin A [Glycine max]        2.68E-07 40.24 13.11 49691.9 4.90 62546341 4 (4 0 0 0 0)    
  Soy3WAF_SC1_S001_04, 9280 R.AFVHWYVGEGMEEGEFSEAR.E 2331.50488 3 2.68E-07 4.78 0.47 2358.7 0.47 1 34/76 26  
  Soy3WAF_SC1_S001_02, 8030 R.AVFVDLEPTVIDEVR.C 1702.92944 2 8.89E-07 3.48 0.42 725.3 0.42 2 18/28 15  
  Soy3WAF_SC1_S001_02, 9404 R.LISQIISSLTTSLR.F 1532.80750 2 3.09E-05 3.55 0.44 2039.5 0.44 1 21/26 5  
  Soy3WAF_SC1_S001_01, 4870 K.DVNAAVATIK.T 1002.14685 2 7.04E-05 2.85 0.38 1330.5 0.38 1 16/18 17  
30 sucrose synthase [Medicago sativa]       3.18E-07 40.22 6.34 92332.0 5.80 3169544 4 (4 0 0 0 0)    
  Soy3WAF_SC1_S001_04, 11470 R.FEVWPYLETYTEDVAHELAK.E 2441.67578 2 3.18E-07 3.99 0.54 998.2 0.54 1 22/38 4  
  Soy3WAF_SC1_S001_02, 5265 R.LDETLTANR.N 1033.11780 2 4.34E-04 2.76 0.36 1341.0 0.36 1 15/16 3  
  Soy3WAF_SC1_S001_04, 9294 R.RYLEMFYALK.Y 1334.61108 2 1.13E-03 2.48 0.00 822.8 0.00 1 14/18 8  
  Soy3WAF_SC1_S001_03, 8766 R.ELVNLVVVAGDR.R 1284.48706 2 3.50E-03 2.23 0.31 1278.7 0.31 1 17/22 3  
31 methionine synthase [Glycine max]        5.32E-07 50.27 12.32 84281.6 5.90 33325957 5 (5 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 10448 R.NIWANDLAASLTTLQGLEGIVGK.D 2385.70142 2 5.32E-07 5.41 0.54 2231.6 0.54 1 27/44    
  Soy3WAF_SC1_S001_02, 8709 K.AAGASWIQFDEPTLVLDLESHK.L 2428.68164 2 1.81E-04 3.56 0.50 498.9 0.50 1 18/42    
  Soy3WAF_SC1_S001_07, 8970 K.SEQAHYLDWAVHAFR.I 1830.98279 3 1.00E-03 4.36 0.31 1254.1 0.31 1 25/56 1  
  Soy3WAF_SC1_S001_07, 10117 K.WFDTNYHFIVPELGPDVNFTYASHK.A 2999.28223 3 7.25E-03 5.38 0.25 1141.6 0.25 1 33/96    
  Soy3WAF_SC1_S001_02, 6101 K.IVEVNALAK.A 957.14923 2 4.72E-02 2.38 0.18 402.4 0.18 1 12/16    
32 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase       7.48E-07 36.17 8.09 84584.0 5.90 77556631 4 (3 0 1 0 0)    
  Soy3WAF_SC1_S001_02, 14452 K.VVKIQEELDIDVLVHGEPER.N 2318.61206 3 7.48E-07 2.51 0.16 460.8 0.16 2 21/76 1  
  Soy3WAF_SC1_S001_03, 7656 K.YGAGIGPGVYDIHSPR.I 1659.82642 3 3.47E-06 3.43 0.49 853.3 0.49 1 28/60 12  
  Soy3WAF_SC1_S001_02, 7089 K.YLFAGVVDGR.N 1097.24841 2 1.92E-04 2.59 0.36 846.0 0.36 1 14/18 8  
  Soy3WAF_SC1_S001_02, 9360 K.GMLTGPVTILNWSFVR.N 1792.13770 2 4.85E-04 2.16 0.29 328.6 0.29 1 12/30 12  
33 methionine synthase [Zea mays]        7.48E-07 16.20 5.87 84452.8 5.70 17017263 2 (0 2 0 0 0)    
  Soy3WAF_SC1_S001_02, 14452 K.VVKLQEELDIDVLVHGEPER.N 2318.61206 3 7.48E-07 2.51 0.09 460.8 0.09 2 21/76    
  Soy3WAF_SC1_S001_07, 10117 K.WFDTNYHFIVPELGPNTKFSYASHK.A 3000.31323 3 4.01E-02 4.02 0.46 827.5 0.46 2 29/96    
34 p24 oleosin isoform A [Glycine max]       8.18E-07 20.21 11.95 23501.5 9.00 476214 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_06, 6771 K.HHLAEAAEYVGQK.T 1453.58435 3 8.18E-07 4.29 0.40 2951.4 0.40 1 31/48 2  
  Soy3WAF_SC1_S001_01, 4209 R.ETQPASENLAAAAK.H 1401.50452 2 1.52E-03 2.82 0.46 1257.4 0.46 1 22/26 2  
35 Ribosomal protein L10E [Medicago truncatula]        1.66E-06 20.18 9.87 25250.5 10.80 92870109 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 7563 R.VAIGQVLLSVR.C 1155.41565 2 1.66E-06 3.64 0.29 2089.6 0.29 1 19/20 7  
  Soy3WAF_SC1_S001_04, 7014 K.LLGCHGPLANR.Q 1208.41870 2 1.60E-02 2.27 0.28 686.8 0.28 1 14/20    
36 Malate dehydrogenase, active site [Medicago truncatula]       2.02E-06 30.15 16.57 35559.6 6.10 92877283 3 (3 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 6455 K.LDLTAEELSEEK.N 1377.47644 2 2.02E-06 2.67 0.21 1011.9 0.21 1 17/22    
  Soy3WAF_SC1_S001_04, 14161 K.GVVATTDVVEACTGVNIAVMVGGFPR.K 2621.03003 3 1.33E-03 2.96 0.23 567.7 0.23 2 27/100 2  
  Soy3WAF_SC1_S001_04, 7585 R.KLSSALSAASAACDHIR.D 1758.98108 3 1.17E-02 2.80 0.12 424.7 0.12 4 23/64 2  
37 lipoxygenase [Glycine max]       2.28E-06 78.21 12.95 96757.5 6.30 18677 8 (7 1 0 0 0)    
  Soy3WAF_SC1_S001_06, 7167 R.HLSVVHPIYK.L 1193.42236 2 2.28E-06 2.92 0.55 863.5 0.55 1 15/18 2  
  Soy3WAF_SC1_S001_01, 4145 R.DNPNWTSDTR.A 1206.20386 2 4.97E-05 2.79 0.37 754.4 0.37 1 15/18 2  
  Soy3WAF_SC1_S001_01, 5432 R.DTMNINGLAR.L 1105.25073 2 4.43E-04 2.22 0.17 563.3 0.17 11 14/18 1  
  Soy3WAF_SC1_S001_02, 9032 R.LSLVNDGGVIEQTFLWGR.Y 2005.26257 2 4.68E-04 2.75 0.45 580.3 0.45 1 16/34 1  
  Soy3WAF_SC1_S001_03, 6441 R.HASDEVYLGER.D 1276.33716 2 1.06E-03 3.20 0.52 592.6 0.52 1 15/20 3  
  Soy3WAF_SC1_S001_02, 9863 K.SVSQNVLPLLQSAFDLNFTPR.E 2347.65503 2 9.75E-03 3.04 0.42 582.6 0.42 1 18/40 1  
  Soy3WAF_SC1_S001_03, 10996 R.LVIEDYPYAVDGLEIWDAIK.T 2323.62549 2 3.24E-02 3.11 0.44 520.1 0.44 1 17/38 5  
  Soy3WAF_SC1_S001_04, 5732 K.ELVEVGHGDKK.N 1211.34973 2 3.26E-02 3.20 0.41 607.3 0.41 1 16/20 2  
38 ribulosebisphosphate carboxylase [Arabidopsis thaliana]        2.48E-06 40.17 9.74 47638.7 6.10 1944432 4 (4 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 5878 R.VALEACVQAR.N 1117.30432 2 2.48E-06 3.38 0.44 1697.1 0.44 1 17/18 21  
  Soy3WAF_SC1_S001_03, 7038 K.TFQGPPHGIQVER.D 1466.62622 3 5.46E-06 2.72 0.24 279.5 0.24 14 18/48 21  
  Soy3WAF_SC1_S001_01, 6729 K.DTDILAAFR.V 1022.13666 2 5.92E-04 2.94 0.32 1197.9 0.32 1 14/16 21  
  Soy3WAF_SC1_S001_04, 7801 R.DNGLLLHIHR.A 1188.36426 2 2.81E-03 2.18 0.23 613.6 0.23 1 14/18 19  
39 eEF-1a [Glycine max]       2.55E-06 20.23 9.84 49377.7 9.40 18765 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_05, 18925 K.VHISIVVIGHVDSGK.S 1560.82263 3 2.55E-06 2.95 0.36 1104.8 0.36 1 27/56    
  Soy3WAF_SC1_S001_02, 17331 K.NMITGTSQADCAVLIIDSTTGGFEAGISK.D 2959.29932 3 2.78E-03 4.69 0.45 686.1 0.45 1 29/112 22  
40 laminin receptor-like protein [Brassica napus]       2.79E-06 20.17 9.93 32030.1 5.00 3769681 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_06, 10971 K.HSIGCLFWLLAR.M 1473.76990 2 2.79E-06 2.43 0.32 694.0 0.32 1 17/22 11  
  Soy3WAF_SC1_S001_02, 7544 R.VIVAIENPQDIIVQSAR.P 1866.15149 2 8.42E-04 3.38 0.00 780.3 0.00 1 18/32 8  
41 Ribosomal protein L3 [Medicago truncatula]       3.93E-06 20.15 5.14 44539.7 10.60 92881046 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_04, 7942 R.HGSLGFLPR.K 984.13647 2 3.93E-06 2.59 0.38 714.1 0.38 1 14/16 6  
  Soy3WAF_SC1_S001_01, 6497 K.DEMIDIIGVTK.G 1234.44507 2 1.54E-02 2.91 0.25 1024.4 0.25 1 15/20 7  
42 Core histone H2A/H2B/H3/H4, putative [Oryza sativa (japonica cultivar-gr       4.54E-06 20.19 26.67 14052.0 10.50 77555213 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_06, 15421 R.VGAGAPVYLAAVLEYLAAEVLELAGNAAR.D 2873.29590 3 4.54E-06 3.77 0.24 453.4 0.24 1 24/112 8  
  Soy3WAF_SC1_S001_03, 6402 R.HIQLAVR.N 837.00494 2 4.01E-03 2.22 0.02 651.1 0.02 1 12/12 14  
43 histone 4 [Zea mays]       5.81E-06 20.19 19.42 11551.5 12.20 886740 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 6386 R.ISGLIYEETR.G 1181.32043 2 5.81E-06 3.76 0.46 1259.5 0.46 1 17/18 1  
  Soy3WAF_SC1_S001_02, 4666 R.DAVTYTEHAR.R 1163.22205 2 2.27E-05 2.55 0.30 941.9 0.30 1 15/18 1  
44 heat shock protein HSP82 [Zea mays]       6.17E-06 30.13 5.87 81890.1 4.80 7546186 3 (3 0 0 0 0)    
  Soy3WAF_SC1_S001_04, 9184 R.RAPFDLFDTR.K 1238.37695 2 6.17E-06 2.64 0.27 273.4 0.27 29 11/18 9  
  Soy3WAF_SC1_S001_01, 5204 R.ELISNASDALDK.I 1276.37537 2 7.04E-05 2.68 0.38 1258.3 0.38 1 17/22 8  
  Soy3WAF_SC1_S001_03, 11847 K.GYEVLFMVDAIDEYAVGQLK.E 2261.57910 2 4.43E-02 2.35 0.26 175.6 0.26 20 12/38 1  
45 similar to ribosomal protein S26 [Medicago sativa]        6.21E-06 20.16 19.35 14267.4 10.40 3885515 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_06, 5615 R.RDDAPRPGQPGQAPR.P 1618.73926 3 6.21E-06 3.04 0.37 560.4 0.37 1 24/56    
  Soy3WAF_SC1_S001_02, 5619 R.NIVEQAAVR.D 1000.13422 2 2.49E-03 2.61 0.15 1070.2 0.15 1 15/16    
46 lipoxygenase [Glycine max]       7.03E-06 36.21 8.58 94368.7 5.90 18675 4 (2 2 0 0 0)    
  Soy3WAF_SC1_S001_07, 7020 R.HLSVLHPIYK.L 1207.44910 3 7.03E-06 4.03 0.33 1483.4 0.33 1 24/36 2  
  Soy3WAF_SC1_S001_04, 10822 R.LFMLDYHDIFMPYVR.Q 1961.33838 3 9.59E-05 2.72 0.42 716.4 0.42 2 27/56    
  Soy3WAF_SC1_S001_03, 8360 R.IYDYDVYNDLGNPDKSEKLAR.P 2489.67871 3 2.26E-03 3.95 0.15 543.2 0.15 4 27/80    
  Soy3WAF_SC1_S001_04, 18071 K.LPTLISLSVIEILSTHASDEVYLGQR.D 2856.26367 3 2.30E-02 2.62 0.17 461.0 0.17 1 23/100    
47 Phosphoglycerate kinase [Medicago truncatula]        9.57E-06 30.16 8.35 50045.5 6.70 92872325 3 (3 0 0 0 0)    
  Soy3WAF_SC1_S001_03, 6981 K.RPFAAIVGGSK.V 1103.29932 2 9.57E-06 3.23 0.38 764.5 0.38 1 16/20 6  
  Soy3WAF_SC1_S001_01, 4306 K.AEDSIGPEVEK.L 1174.23999 2 5.72E-04 2.30 0.25 732.6 0.25 1 15/20    
  Soy3WAF_SC1_S001_01, 5687 R.ADLNVPLDDNQNITDDTR.I 2030.09619 2 1.81E-02 2.56 0.21 246.9 0.21 2 14/34 3  
48 alpha subunit of beta conglycinin [Glycine max]        9.74E-06 20.15 4.79 63164.3 4.80 9967357 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_05, 5605 R.QEEEHEQREEQEWPR.K 2040.05286 3 9.74E-06 2.95 0.42 521.3 0.42 1 23/56 3  
  Soy3WAF_SC1_S001_02, 4551 R.ESEESEDSELR.R 1310.26074 2 4.96E-05 2.81 0.40 612.8 0.40 1 14/20 2  
49 GLN1;5; glutamate-ammonia ligase [Arabidopsis thaliana]       9.88E-06 18.14 3.97 38906.8 6.20 15221198 2 (1 1 0 0 0)    
  Soy3WAF_SC1_S001_08, 5752 K.HKQHIAAYGEGNER.R 1610.71558 3 9.88E-06 2.81 0.03 759.7 0.03 2 22/52 2  
  Soy3WAF_SC1_S001_02, 4649 K.QHIAAYGEGNER.R 1345.40271 2 3.55E-04 2.49 0.50 861.8 0.50 2 17/22 2  
50 glycine-rich RNA-binding protein [Citrus unshiu]        1.39E-05 20.15 14.37 16848.7 8.50 7024451 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_01, 4978 R.DAIEGMNGQNLDGR.N 1490.58167 2 1.39E-05 3.01 0.21 745.3 0.21 2 18/26 2  
  Soy3WAF_SC1_S001_03, 13874 R.DAIEGMNGQNLDGRNITVNEAQSR.G 2603.76855 3 1.08E-02 2.78 0.14 414.5 0.14 3 25/92 2  
51 ribosomal protein S3 [Medicago truncatula]        1.88E-05 30.19 14.64 26658.0 10.00 92885944 3 (3 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 17636 R.ELAEDGYSGVEVR.V 1424.49487 2 1.88E-05 3.33 0.37 1096.1 0.37 1 16/24 5  
  Soy3WAF_SC1_S001_01, 4706 K.DYIDSAVR.H 939.00452 2 1.55E-03 2.09 0.18 895.3 0.18 1 13/14    
  Soy3WAF_SC1_S001_03, 8347 R.FKFPENSVELYAEK.V 1701.90002 3 3.91E-02 2.93 0.04 636.4 0.04 3 20/52    
52 luminal binding protein [Arabidopsis thaliana]        2.19E-05 40.21 8.82 73621.8 4.90 1695717 4 (4 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 14927 R.GTPQIEVTFEVDANGILNVK.A 2145.39819 2 2.19E-05 4.21 0.52 847.2 0.52 1 19/38 9  
  Soy3WAF_SC1_S001_02, 8831 R.VEIESLFDGVDFSEPLTR.A 2054.24243 2 2.66E-05 2.28 0.25 302.8 0.25 1 13/34 7  
  Soy3WAF_SC1_S001_02, 3509 R.ALSSQHQVR.V 1026.13171 2 5.49E-05 2.54 0.26 546.5 0.26 1 12/16 8  
  Soy3WAF_SC1_S001_02, 6732 K.DAGVIAGLNVAR.I 1156.31738 2 3.55E-03 3.09 0.29 1738.8 0.29 1 18/22 12  
53 Clathrin propeller, N-terminal; Protein prenyltransferase [Medicago trun       2.22E-05 20.15 1.41 193325.5 5.20 92892796 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_01, 3287 K.DAMETASQSGER.E 1282.32043 2 2.22E-05 2.88 0.32 1023.5 0.32 1 17/22 1  
  Soy3WAF_SC1_S001_02, 5892 K.LQQFQGAVDAAR.K 1304.43689 2 1.32E-02 3.05 0.00 1101.5 0.00 1 17/22 6  
54 Kunitz trypsin inhibitor [Glycine soja]        5.36E-05 20.17 11.98 24101.2 4.90 96777258 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_04, 7056 K.CGDIGISIDHDDGTRR.L 1787.89307 3 5.36E-05 2.54 0.21 460.9 0.21 2 22/60 7  
  Soy3WAF_SC1_S001_01, 4538 R.VSDDEFNNYK.L 1231.25000 2 5.65E-04 3.41 0.39 1391.0 0.39 1 16/18 8  
55 photosystem II CP43 chlorophyll apoprotein [Glycine max]       6.29E-05 20.18 4.86 51919.5 6.80 91214137 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 6816 - 6818 R.SPTGEVIFGGETMR.F 1481.65625 2 6.29E-05 3.65 0.42 1075.3 0.42 1 19/26 5  
  Soy3WAF_SC1_S001_01, 4641 R.GPNGLDLSR.L 929.01288 2 1.50E-04 2.21 0.12 674.0 0.12 6 12/16 6  
56 SecY protein; ABC transporter related [Medicago truncatula]        9.35E-05 40.19 14.50 52195.9 9.20 92876744 4 (4 0 0 0 0)    
  Soy3WAF_SC1_S001_05, 12540 R.GAEFEGAVIALFHLLITR.T 1958.29224 3 9.35E-05 2.79 0.15 515.8 0.15 4 21/68 3  
  Soy3WAF_SC1_S001_08, 13991 K.LFYTSNMPIILQSALVSNLYFISQLLHR.K 3283.87402 3 2.03E-03 3.75 0.53 362.2 0.53 1 29/108 1  
  Soy3WAF_SC1_S001_02, 8193 R.PFLSFLPEVQTADR.K 1620.83020 2 9.77E-03 2.00 0.08 126.8 0.08 31 10/26 1  
  Soy3WAF_SC1_S001_02, 5518 K.IIEVDNNVR.E 1072.19714 2 4.13E-02 2.40 0.11 400.1 0.11 20 11/16 5  
57 P0028G04.17 [Oryza sativa (japonica cultivar-group)]        9.42E-05 14.13 16.46 27428.7 11.00 34894636 2 (1 0 0 1 0)    
  Soy3WAF_SC1_S001_01, 9585 K.LNFLDISDIPKISVFTPAM*SKR.E 2509.94916 3 9.42E-05 2.52 0.19 380.3 0.19 6 22/84    
  Soy3WAF_SC1_S001_02, 7328 R.QRKLFFGAATVLSEFPK.S 1940.27686 2 1.49E-02 2.01 0.06 488.3 0.06 1 13/32    
58 ATP binding / protein binding [Arabidopsis thaliana]        9.46E-05 20.19 5.88 51146.7 5.20 42571633 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_03, 17892 R.WVGGVELELIAIATGGR.I 1742.01208 2 9.46E-05 3.12 0.30 837.1 0.30 1 15/32 2  
  Soy3WAF_SC1_S001_02, 5328 R.IAEGYEMASR.V 1127.25317 2 2.75E-04 2.62 0.31 1267.2 0.31 1 17/18 1  
59 Annexin, putative [Medicago truncatula]        1.07E-04 20.14 3.54 35456.9 9.00 92891291 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_03, 5998 K.VGTDEDALTR.V 1077.12744 2 1.07E-04 2.48 0.17 466.9 0.17 2 15/18 1  
  Soy3WAF_SC1_S001_03, 5751 K.KVGTDEDALTR.V 1205.30042 2 5.61E-04 2.14 0.16 704.1 0.16 1 17/20 1  
60 dnaK-type molecular chaperone hsp70 [Oryza sativa (japonica cultivar-gro       1.65E-04 40.18 9.38 59881.5 4.90 77552704 4 (4 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 7924 R.FEELNMDLFR.K 1314.49194 2 1.65E-04 3.24 0.39 1488.8 0.39 1 16/18 21  
  Soy3WAF_SC1_S001_05, 13375 K.VQDLLLLDVTPLSLGLETAGGVMTVLIPR.N 3035.63159 2 7.60E-04 3.51 0.57 492.6 0.57 1 19/56 13  
  Soy3WAF_SC1_S001_03, 7522 R.MVNHFVQEFK.R 1279.49243 2 5.70E-03 2.43 0.00 1035.2 0.00 1 16/18 18  
  Soy3WAF_SC1_S001_03, 9172 R.ARFEELNMDLFR.K 1541.75647 2 1.77E-02 2.15 0.07 386.9 0.07 2 12/22 20  
61 clathrin heavy chain, putative [Oryza sativa (japonica cultivar-group)]       2.25E-04 38.17 2.99 193346.1 5.10 77552802 4 (3 1 0 0 0)    
  Soy3WAF_SC1_S001_03, 7034 K.HELLEMR.R 928.09149 2 2.25E-04 2.39 0.19 1092.7 0.19 1 12/12 3  
  Soy3WAF_SC1_S001_03, 11629 K.QVGYTPDYLFLLQTILR.T 2041.37805 2 1.82E-03 3.31 0.48 539.6 0.48 1 15/32 5  
  Soy3WAF_SC1_S001_02, 5892 K.LKQFQGAVDAAR.K 1304.47998 2 1.32E-02 3.05 0.40 1101.5 0.40 1 17/22 2  
  Soy3WAF_SC1_S001_04, 10187 R.AHMGIFTELGVLYAR.Y 1678.97949 2 3.97E-02 3.22 0.45 478.5 0.45 1 15/28 8  
62 Actin [Oryza sativa (japonica cultivar-group)]        2.50E-04 18.18 5.84 41654.5 5.40 77556832 2 (1 1 0 0 0)    
  Soy3WAF_SC1_S001_08, 8155 K.IWHHTFYNELR.V 1516.68689 3 2.50E-04 3.50 0.23 936.8 0.23 1 22/40 56  
  Soy3WAF_SC1_S001_02, 4498 K.DAYVGDEAQSK.R 1183.20691 2 2.76E-02 2.13 0.10 498.9 0.10 2 13/20 49  
63 phosphoenolpyruvate carboxylase [Arabidopsis thaliana]        3.13E-04 20.15 3.12 109779.8 5.50 37785629 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 8799 R.VPYNAPLIQFSSWMGGDR.D 2039.30261 2 3.13E-04 3.03 0.47 510.9 0.47 1 17/34 27  
  Soy3WAF_SC1_S001_03, 8959 K.RQEWLLSELSGK.R 1446.63330 2 4.11E-03 2.06 0.10 371.6 0.10 4 11/22 15  
64 ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit [Glycine       3.98E-04 20.14 3.58 52609.4 6.00 91214125 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 9004 R.EITLGFVDLLR.D 1276.50647 1 3.98E-04 2.72 0.24 197.0 0.24 1 13/20 4  
  Soy3WAF_SC1_S001_01, 3377 R.DDFVEK.D 752.79205 1 3.89E-02 1.52 0.17 334.5 0.17 1 8/10 3  
65 Tudor; Staphylococcus nuclease subtype [Medicago truncatula]        5.51E-04 20.17 2.12 108304.6 6.60 92871102 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_03, 7969 R.RGGVDEPFAWESR.E 1506.60413 3 5.51E-04 3.36 0.24 1258.5 0.24 1 24/48 2  
  Soy3WAF_SC1_S001_03, 6516 R.RVNLSSIR.C 945.10181 2 2.69E-02 2.39 0.12 568.7 0.12 1 13/14 3  
66 Lipid-binding START [Medicago truncatula]        6.73E-04 18.15 9.97 43263.6 10.00 92892068 2 (1 1 0 0 0)    
  Soy3WAF_SC1_S001_06, 13570 R.NACEITMFHQEDAGLNVEMAKLAFSK.G 2956.36719 3 6.73E-04 2.92 0.49 452.3 0.49 10 20/100    
  Soy3WAF_SC1_S001_03, 8432 K.YVRVEFFRSGWR.I 1602.82300 3 8.96E-03 2.62 0.21 662.6 0.21 5 19/44    
67 A Chain A, Crystal Structure Of The Soybean Agglutinin In A Complex With A Bia       7.00E-04 20.17 13.44 27571.7 5.00 14719778 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_03, 8497 R.ALYSTPIHIWDK.E 1444.65894 2 7.00E-04 2.69 0.13 559.1 0.13 1 13/22    
  Soy3WAF_SC1_S001_02, 14967 K.VLITYDASTSLLVASLVYPSQR.T 2397.75220 2 4.72E-03 3.42 0.38 600.5 0.38 1 16/42    
68 Pyruvate kinase [Medicago truncatula]        9.08E-04 20.18 3.99 63140.0 6.20 92883864 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_01, 4792 K.EGEEVALVQSGR.Q 1274.36267 2 9.08E-04 3.59 0.42 1703.2 0.42 1 18/22 1  
  Soy3WAF_SC1_S001_02, 6507 R.AEVSDIAIAVR.E 1144.30334 2 9.52E-03 2.10 0.06 679.0 0.06 5 14/20 10  
69 Ribosomal L18ae protein [Medicago truncatula]        1.04E-03 20.14 12.92 21296.9 10.70 92891579 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_01, 7052 K.SNGQVLAINEIFEK.N 1562.74902 2 1.04E-03 2.73 0.10 747.3 0.10 2 16/26    
  Soy3WAF_SC1_S001_04, 6600 K.FHQYQVVGR.A 1134.27197 2 1.39E-02 2.71 0.08 952.9 0.08 1 14/16 6  
70 Mitochondrial ribosomal protein L5 [Medicago truncatula]        1.32E-03 20.15 21.55 20684.9 10.30 92867593 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 13566 R.NFSDTGCFGFGIQEHIDLGIK.Y 2356.59888 3 1.32E-03 2.97 0.31 336.1 0.31 2 21/80 8  
  Soy3WAF_SC1_S001_05, 11171 K.YDPSTGIYGMDFFVVLER.P 2110.37427 2 3.95E-02 2.09 0.08 96.3 0.08 38 9/34 1  
71 SAHH_MEDSA Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHc       1.42E-03 26.23 9.90 53150.9 5.60 1710838 3 (1 2 0 0 0)    
  Soy3WAF_SC1_S001_03, 6932 R.HSLPDGLMR.A 1026.19519 2 1.42E-03 2.54 0.21 371.0 0.21 5 11/16 16  
  Soy3WAF_SC1_S001_02, 6198 R.IVGVSEETTTGVK.R 1320.47131 2 1.84E-03 2.26 0.24 561.9 0.24 1 15/24 1  
  Soy3WAF_SC1_S001_04, 15242 R.ITGSLHM*TIQTAVLIETLTALGAEVR.W 2756.21213 3 4.10E-02 2.61 0.10 555.3 0.10 1 24/100 13  
72 Histone H2A; Histone-fold [Medicago truncatula]        2.21E-03 20.15 9.46 15746.3 11.30 87240419 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_01, 1788 R.NDEELGK.L 804.82538 1 2.21E-03 2.28 0.12 219.3 0.12 2 9/12 7  
  Soy3WAF_SC1_S001_03, 6726 R.HVLLAVR.N 808.00671 2 2.58E-03 2.38 0.33 616.9 0.33 1 12/12 2  
73 MCM; Nucleic acid-binding, OB-fold [Medicago truncatula]        2.44E-03 4.12 2.86 93484.7 6.00 92886515 2 (0 0 0 0 2)    
  Soy3WAF_SC1_S001_04, 8981 R.FDLIYLM*LDK.A 1287.54952 2 2.44E-03 2.27 - 716.3 - 4 11/18    
  Soy3WAF_SC1_S001_01, 6129 R.NLNPSDIERM*VSMK.G 1650.90308 1 1.05E-02 1.51 - 169.8 - 25 9/26    
74 retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa (ja       2.83E-03 20.17 1.77 204788.0 7.90 77554434 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 7434 K.QELPQDENEAER.I 1458.46973 2 2.83E-03 2.21 0.11 292.0 0.11 2 12/22    
  Soy3WAF_SC1_S001_02, 4196 R.KETVEAM*DIQGVSMIEADWR.E 2325.60508 3 1.67E-02 3.45 0.02 1064.4 0.02 4 26/76 1  
75 Cell division protein FtsZ; Peptidase S26A, signal peptidase I [Medicago       3.79E-03 16.13 4.94 49927.1 4.70 92894218 2 (0 2 0 0 0)    
  Soy3WAF_SC1_S001_02, 7079 R.VSEQFTVMFK.R 1216.43140 2 3.79E-03 2.28 0.45 678.1 0.45 4 12/18    
  Soy3WAF_SC1_S001_01, 4254 K.EVDQQM*INVQNK.N 1462.61132 2 1.90E-02 2.24 0.02 308.8 0.02 4 13/22    
76 G beta-like protein [Glycine max]       3.82E-03 20.14 8.62 35608.0 7.60 1256608 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 6903 R.LWDLAAGTSAR.R 1161.29248 2 3.82E-03 2.83 0.22 696.4 0.22 1 14/20    
  Soy3WAF_SC1_S001_02, 7448 R.FSPSTLQPTIVSASWDR.T 1893.08911 2 3.96E-02 2.90 0.32 732.1 0.32 1 17/32    
77 40S ribosomal S4 protein [Glycine max]        4.21E-03 20.12 6.44 29960.8 10.70 22138108 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_02, 6191 K.LSIIEEAR.K 931.06866 2 4.21E-03 2.40 0.16 663.4 0.16 1 11/14 1  
  Soy3WAF_SC1_S001_01, 3101 R.IAAQQATAA 844.93585 1 1.99E-02 1.63 0.36 212.2 0.36 1 9/16    
78 alcohol dehydrogenase 1 [Glycine max]        7.70E-03 20.18 9.26 40006.6 6.20 22597178 2 (2 0 0 0 0)    
  Soy3WAF_SC1_S001_03, 9324 K.PKPNNTVAVFGLGAVGLAACEGAR.V 2370.71655 3 7.70E-03 3.51 0.32 739.8 0.32 1 28/92    
  Soy3WAF_SC1_S001_07, 5974 K.GTFYGHYRPR.T 1254.38123 2 3.10E-02 2.06 0.30 392.3 0.30 2 12/18    
79 putative HGA1 [Oryza sativa (japonica cultivar-group)]       8.68E-03 12.14 5.83 61948.1 5.80 50907653 2 (1 0 0 0 1)    
  Soy3WAF_SC1_S001_06, 6867 K.KNGVAAGGDTKIK.C 1259.43750 3 8.68E-03 2.78 0.20 328.5 0.20 7 19/48    
  Soy3WAF_SC1_S001_03, 13858 K.TIYVVNPSGAGGFDENGEKR.L 2111.25732 2 2.66E-02 2.17 - 649.9 - 2 16/38    
80 unknown protein [Arabidopsis thaliana]       8.79E-03 16.15 1.61 230851.3 5.80 15219352 2 (0 2 0 0 0)    
  Soy3WAF_SC1_S001_02, 4076 R.KAMAEAGGVYWVQEMLR.S 1940.27905 2 8.79E-03 2.99 0.47 492.7 0.47 47 13/32    
  Soy3WAF_SC1_S001_02, 16955 -.M*TSEM*DDPEKAAVTITR.L 1928.13221 2 1.94E-02 2.42 0.37 262.9 0.37 7 12/32    
81 Ribonuclease H [Medicago truncatula]        1.19